Click here to switch to the map view.

The map label for this gene is ycaR [C]

Identifier: 88607123

GI number: 88607123

Start: 62012

End: 62227

Strand: Direct

Name: ycaR [C]

Synonym: APH_0052

Alternate gene names: 88607123

Gene position: 62012-62227 (Clockwise)

Preceding gene: 88607705

Following gene: 88606858

Centisome position: 4.21

GC content: 42.59

Gene sequence:

>216_bases
GTGTTAGATAAAAAGGTCTTGGAAATTTTAGTTTGCCCCCTCACTGGGGGTAAACTTTCGTATGATACAGAACGTGCTGA
ACTTATTAGCCATGAAGCAGGGCTTGCATATCCTGTACGTGATGGCATTCCTATCATGCTTGTTGATGAAGCAAGAAAGT
TACAACCAGAAGAGCCGAAAGAAGGCTCTGAGCTCCAATCATCGGACAATCAATAA

Upstream 100 bases:

>100_bases
ATCTTGGGGTGAGTTTCAAGAGAGCGAATTGCCTTTGCAGGAACTTGAAAAATACCTTGGCGAATCTGTACAAATTGCTG
ATGAAGAAGGTTGGAAATAG

Downstream 100 bases:

>100_bases
CTTATTACTCAGGAAACTAACAAGCAGCCATTAACAATGGCTGCTAGACTTTAGTAAGAAACCCCAGCAGTAGAGTACTA
CTGTTTGACCCAGTCTCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MLDKKVLEILVCPLTGGKLSYDTERAELISHEAGLAYPVRDGIPIMLVDEARKLQPEEPKEGSELQSSDNQ

Sequences:

>Translated_71_residues
MLDKKVLEILVCPLTGGKLSYDTERAELISHEAGLAYPVRDGIPIMLVDEARKLQPEEPKEGSELQSSDNQ
>Mature_71_residues
MLDKKVLEILVCPLTGGKLSYDTERAELISHEAGLAYPVRDGIPIMLVDEARKLQPEEPKEGSELQSSDNQ

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=59, Percent_Identity=49.1525423728814, Blast_Score=65, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y052_ANAPZ (Q2GLR6)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_504685.1
- ProteinModelPortal:   Q2GLR6
- SMR:   Q2GLR6
- STRING:   Q2GLR6
- GeneID:   3930408
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_0052
- NMPDR:   fig|212042.5.peg.48
- TIGR:   APH_0052
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   NELVSEK
- PhylomeDB:   Q2GLR6
- BioCyc:   APHA212042:APH_0052-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 7866; Mature: 7866

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKKVLEILVCPLTGGKLSYDTERAELISHEAGLAYPVRDGIPIMLVDEARKLQPEEPK
CCCHHEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEECCCCCCCCCCCC
EGSELQSSDNQ
CCCCCCCCCCC
>Mature Secondary Structure
MLDKKVLEILVCPLTGGKLSYDTERAELISHEAGLAYPVRDGIPIMLVDEARKLQPEEPK
CCCHHEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCEECCCCCCEEEECCCCCCCCCCCC
EGSELQSSDNQ
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA