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The map label for this gene is msp4 [H]

Identifier: 88606879

GI number: 88606879

Start: 174551

End: 175531

Strand: Reverse

Name: msp4 [H]

Synonym: APH_0174

Alternate gene names: 88606879

Gene position: 175531-174551 (Counterclockwise)

Preceding gene: 88607490

Following gene: 88607467

Centisome position: 11.93

GC content: 45.16

Gene sequence:

>981_bases
TTGGAGACTGGTGGTGCGGGATATTTCTATGTTGGTTTGGATTACAGTCCAGCGTTTAGCAAGATAAGAGATTTTAGTAT
AAGGGAGAGTAACGGAGAGACTAAGGCAGTATATCCATACTTAAAGGATGGAAAGAGTGTAAAGCTAGAGTCACACAAGT
TTGACTGGAACACACCTGATCCTCGGATTGGGTTTAAGGACAACATGCTTGTAGCTATGGAAGGCAGTGTTGGTTATGGT
ATTGGTGGTGCCAGGGTTGAGCTTGAGATTGGTTACGAGCGCTTCAAGACCAAGGGTATTAGAGATAGTGGTAGTAAGGA
AGATGAAGCTGATACAGTATATCTACTAGCTAAGGAGTTAGCTTATGATGTTGTTACTGGGCAGACTGATAACCTTGCCG
CTGCTCTTGCCAAAACCTCCGGTAAGGATATTGTTCAGTTTGCCAATGCTGTGAAAATTTCTAGCCCTACCATCGATGGG
AAGGTTTGTAGTGGAAAACATGCAGCGTTGCAAGCTGGTCAAGGAACGACGTATCATGAAAAACCACACCAAACTGATAA
CAATACTGCGCAATGTAGCGGGTTAGGCAGCGGAAGCGCGGGAGCAGACCAAAAGTTTTTGAGTAAGTTTGTGAGTGCTG
TAGGGTTGTCGGAGAATAAAAACTGGCCTACTGGTCAGGCTGGGAAGAGCAGTAGTGGTCCTGTGGTGGGTGCTCCTAAT
AGCAACGCCAACGCTATGGCTAGAGACTTGGTAGATCTTAATCGAGACGAAAAAACCATAGTAGCAGGATTACTAGCGAA
GACTATTGAAGGGGGTGAAGTTGTTGAAATCAGGTCGGTTTCTTCTACTTCTGTGATGGTTAATGCTTGTTATGATCTTC
TTAGTGAAGGTTTAGGCGTTGTTCCTTATGCTTGTGTCGGTCTTGGGGGTAACTTCGTCGGCGTTGTTGATGGGCATATC
ACAAACCACTCCCATCTCTGA

Upstream 100 bases:

>100_bases
AACTACATACCGAATAACACTGTATTCGAACAGTACAACAATTCCGCATCAAAAAACACCTCAACTCCCTGATGTCAGGG
CTCATGATGACGTTAGCGCT

Downstream 100 bases:

>100_bases
CCCTGTATGCACCTAGCAAGTAACGCGGCAAAATTAGTGCTGCATCACTCACGAAACAAACTACGATCAGCGATTTACCA
TACTTAGCAGGTCCGTACAG

Product: P44-55 outer membrane protein, silent

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
METGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTPDPRIGFKDNMLVAMEGSVGYG
IGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKTSGKDIVQFANAVKISSPTIDG
KVCSGKHAALQAGQGTTYHEKPHQTDNNTAQCSGLGSGSAGADQKFLSKFVSAVGLSENKNWPTGQAGKSSSGPVVGAPN
SNANAMARDLVDLNRDEKTIVAGLLAKTIEGGEVVEIRSVSSTSVMVNACYDLLSEGLGVVPYACVGLGGNFVGVVDGHI
TNHSHL

Sequences:

>Translated_326_residues
METGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTPDPRIGFKDNMLVAMEGSVGYG
IGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKTSGKDIVQFANAVKISSPTIDG
KVCSGKHAALQAGQGTTYHEKPHQTDNNTAQCSGLGSGSAGADQKFLSKFVSAVGLSENKNWPTGQAGKSSSGPVVGAPN
SNANAMARDLVDLNRDEKTIVAGLLAKTIEGGEVVEIRSVSSTSVMVNACYDLLSEGLGVVPYACVGLGGNFVGVVDGHI
TNHSHL
>Mature_326_residues
METGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTPDPRIGFKDNMLVAMEGSVGYG
IGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKELAYDVVTGQTDNLAAALAKTSGKDIVQFANAVKISSPTIDG
KVCSGKHAALQAGQGTTYHEKPHQTDNNTAQCSGLGSGSAGADQKFLSKFVSAVGLSENKNWPTGQAGKSSSGPVVGAPN
SNANAMARDLVDLNRDEKTIVAGLLAKTIEGGEVVEIRSVSSTSVMVNACYDLLSEGLGVVPYACVGLGGNFVGVVDGHI
TNHSHL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 34359; Mature: 34359

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTPD
CCCCCCEEEEEEECCCHHHHHHHCCEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCC
PRIGFKDNMLVAMEGSVGYGIGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKEL
CCCCCCCCEEEEEECCCCCCCCCEEEEEEECHHHHHCCCCCCCCCCCCCCCCCEEHHHHH
AYDVVTGQTDNLAAALAKTSGKDIVQFANAVKISSPTIDGKVCSGKHAALQAGQGTTYHE
HHHHHCCCCCCHHHHHHHCCCHHHHHHHHHEEECCCCCCCEEECCCHHEEECCCCCCCCC
KPHQTDNNTAQCSGLGSGSAGADQKFLSKFVSAVGLSENKNWPTGQAGKSSSGPVVGAPN
CCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCC
SNANAMARDLVDLNRDEKTIVAGLLAKTIEGGEVVEIRSVSSTSVMVNACYDLLSEGLGV
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
VPYACVGLGGNFVGVVDGHITNHSHL
CCHHEEECCCCEEEEEECEECCCCCC
>Mature Secondary Structure
METGGAGYFYVGLDYSPAFSKIRDFSIRESNGETKAVYPYLKDGKSVKLESHKFDWNTPD
CCCCCCEEEEEEECCCHHHHHHHCCEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCC
PRIGFKDNMLVAMEGSVGYGIGGARVELEIGYERFKTKGIRDSGSKEDEADTVYLLAKEL
CCCCCCCCEEEEEECCCCCCCCCEEEEEEECHHHHHCCCCCCCCCCCCCCCCCEEHHHHH
AYDVVTGQTDNLAAALAKTSGKDIVQFANAVKISSPTIDGKVCSGKHAALQAGQGTTYHE
HHHHHCCCCCCHHHHHHHCCCHHHHHHHHHEEECCCCCCCEEECCCHHEEECCCCCCCCC
KPHQTDNNTAQCSGLGSGSAGADQKFLSKFVSAVGLSENKNWPTGQAGKSSSGPVVGAPN
CCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCC
SNANAMARDLVDLNRDEKTIVAGLLAKTIEGGEVVEIRSVSSTSVMVNACYDLLSEGLGV
CCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
VPYACVGLGGNFVGVVDGHITNHSHL
CCHHEEECCCCEEEEEECEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]