Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200445
Identifier: 87200445
GI number: 87200445
Start: 2615344
End: 2616177
Strand: Reverse
Name: 87200445
Synonym: Saro_2432
Alternate gene names: NA
Gene position: 2616177-2615344 (Counterclockwise)
Preceding gene: 87200446
Following gene: 87200444
Centisome position: 73.46
GC content: 68.11
Gene sequence:
>834_bases ATGATCGTCGACAGCCACCATCATTTCTGGAGCCTCGGCAATCCTTTCACCGACTGGCCGACGCCGGACCTCGCGCCGAT CCACCGCGATTTCCTGCCCTCGGACCTCGAGGCGGAAATCGCAGCCGCCGGGGTGACCGGAACCGTTCTCGTCCAGGCGG CGCCCGCCCTTGCGGAGACGCACTGGCTTCTGGAGATCGCGGCGCGGACGCCAACGGTTCTGGGCGTCGTCGGCTGGGTC GATCTTGCCGCCCCTTCCGCCACCGAGGATTTGACAGCGCTGGCCCACGACCCGCTCCTGCGCGGCCTGCGCCCGATGCT TCAGTCGATCCCGCAACAGGGCTGGATTCTCGCAGGCGCGGTCGAGCCGGCCCTTCGCGCCATGGCAGGGCGGGGGCTCT GCTTCGATGCCCTCGTTCGTGCCGACCAGATCGGCGAGATCACCCGCCTGGCGCGTCGCCATCCAGACTTGCGCATCGTG CTCGACCACGGCGGAAAGCCTGACATCGCCAATGGCGTCTTCGCGCCCTGGGCAGCCGATCTCGAAGTGCTCGCCGCCTG TCCCAACGTCTGGTGCAAGCTGTCGGGCTTGTGGACCGAGGCTGGGCAGGATCTCTCCGACGCGACAATCGCGCCCTGGG CGCGGCACATCCTGTCGTGCTTCGGCACTGCCCGCACGATCTGGGGCAGCGACTGGCCGGTCGTGCGACTGGCCGGGGGA TACACCGGCTGGCTGGCCCAGTGCCGCCGCCTGCTCGACGACCTCGACGACCATGGTCGCGCGCAGGTCTTTGCCCTCAA CGGAATGGATTTCTATGGCCTTGCCCGAAGCTGA
Upstream 100 bases:
>100_bases CGGTCGATCTGGCCGGTCGCACGATCCCCACGGCCTTCTGGGCGGATCTGGTGGATGCCGGGCTCGTCGATCCCGCCGCT CCGCTTCCGGGAGGGAGCGC
Downstream 100 bases:
>100_bases CAGAGAGCAGGGCGCGTTCCTGCTGCTCGATCCGGCGGACAACATCCTGGTCTGCACGCGCGATGCGCTGGCGGGCGACC TGGTGACCATCGACGGCATT
Product: amidohydrolase 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MIVDSHHHFWSLGNPFTDWPTPDLAPIHRDFLPSDLEAEIAAAGVTGTVLVQAAPALAETHWLLEIAARTPTVLGVVGWV DLAAPSATEDLTALAHDPLLRGLRPMLQSIPQQGWILAGAVEPALRAMAGRGLCFDALVRADQIGEITRLARRHPDLRIV LDHGGKPDIANGVFAPWAADLEVLAACPNVWCKLSGLWTEAGQDLSDATIAPWARHILSCFGTARTIWGSDWPVVRLAGG YTGWLAQCRRLLDDLDDHGRAQVFALNGMDFYGLARS
Sequences:
>Translated_277_residues MIVDSHHHFWSLGNPFTDWPTPDLAPIHRDFLPSDLEAEIAAAGVTGTVLVQAAPALAETHWLLEIAARTPTVLGVVGWV DLAAPSATEDLTALAHDPLLRGLRPMLQSIPQQGWILAGAVEPALRAMAGRGLCFDALVRADQIGEITRLARRHPDLRIV LDHGGKPDIANGVFAPWAADLEVLAACPNVWCKLSGLWTEAGQDLSDATIAPWARHILSCFGTARTIWGSDWPVVRLAGG YTGWLAQCRRLLDDLDDHGRAQVFALNGMDFYGLARS >Mature_277_residues MIVDSHHHFWSLGNPFTDWPTPDLAPIHRDFLPSDLEAEIAAAGVTGTVLVQAAPALAETHWLLEIAARTPTVLGVVGWV DLAAPSATEDLTALAHDPLLRGLRPMLQSIPQQGWILAGAVEPALRAMAGRGLCFDALVRADQIGEITRLARRHPDLRIV LDHGGKPDIANGVFAPWAADLEVLAACPNVWCKLSGLWTEAGQDLSDATIAPWARHILSCFGTARTIWGSDWPVVRLAGG YTGWLAQCRRLLDDLDDHGRAQVFALNGMDFYGLARS
Specific function: Unknown
COG id: COG3618
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006992 [H]
Pfam domain/function: PF04909 Amidohydro_2 [H]
EC number: NA
Molecular weight: Translated: 29990; Mature: 29990
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVDSHHHFWSLGNPFTDWPTPDLAPIHRDFLPSDLEAEIAAAGVTGTVLVQAAPALAET CEECCCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCCCCHHHHHHHCHHHHHH HWLLEIAARTPTVLGVVGWVDLAAPSATEDLTALAHDPLLRGLRPMLQSIPQQGWILAGA HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEH VEPALRAMAGRGLCFDALVRADQIGEITRLARRHPDLRIVLDHGGKPDIANGVFAPWAAD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH LEVLAACPNVWCKLSGLWTEAGQDLSDATIAPWARHILSCFGTARTIWGSDWPVVRLAGG HHHHHHCCHHHEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC YTGWLAQCRRLLDDLDDHGRAQVFALNGMDFYGLARS CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC >Mature Secondary Structure MIVDSHHHFWSLGNPFTDWPTPDLAPIHRDFLPSDLEAEIAAAGVTGTVLVQAAPALAET CEECCCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHCCCCHHHHHHHCHHHHHH HWLLEIAARTPTVLGVVGWVDLAAPSATEDLTALAHDPLLRGLRPMLQSIPQQGWILAGA HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEH VEPALRAMAGRGLCFDALVRADQIGEITRLARRHPDLRIVLDHGGKPDIANGVFAPWAAD HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHH LEVLAACPNVWCKLSGLWTEAGQDLSDATIAPWARHILSCFGTARTIWGSDWPVVRLAGG HHHHHHCCHHHEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC YTGWLAQCRRLLDDLDDHGRAQVFALNGMDFYGLARS CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]