| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is ucpA [H]
Identifier: 87200442
GI number: 87200442
Start: 2613078
End: 2613818
Strand: Reverse
Name: ucpA [H]
Synonym: Saro_2429
Alternate gene names: 87200442
Gene position: 2613818-2613078 (Counterclockwise)
Preceding gene: 87200443
Following gene: 87200441
Centisome position: 73.39
GC content: 66.53
Gene sequence:
>741_bases ATGACGACCACTTTCGACCTTTCAGGCAAGCGCGCGCTGGTTACCGGCGCCGGGCAGGGCATCGGCCGGGCCAGCGCCGA GGCGTTCCGCGATGCGGGTGCAGATGTTCTGGCAACCGACCTCAATCCCCATGCGCTTGCCTCGCTGGACGGCTGCCGCA GCCGCGTTCTCGATGTGACCGATGCTGCGGCAATCGCCGCGATGGTCGCCGAGGAGGACGGCTTCGATGTCGTGTTCAAC TGCGCTGGCGTGGTGCACAACGGCACGATCCTCGATTGTACCGATGCGGACTGGGCCTTTGCGCTCGACCTCAACGTGAC GGCGATGTTCCGGATGACCCGCGCCATTCTGCCCGGCATGATCGCGCGCGGCGGCGGATCGATCATCAACATGGCTTCGG TCGCAAGTTCCATCCTCGGCGTAGCCAACCGCTTCGCCTATGGCGCGAGCAAGGCTGCGGTGATCGGCCTGACCAAGGCG GTGGCGGCGGACTTCGTGCAGCAGGGCGTACGCTGCAACGCGATCTGCCCCGGCACCGTGCATTCTCCCTCGCTCGAGCA GCGGCTTGCCGCAACCGGCGATTTCAACGCCGCCATGGCCGCCTTCACCGCGCGCCAGCCGATGGGACGGATCGGTCGCC CGGACGAGATCGCCGCGCTCGCGCTCTATCTCGCCAGCGATGCCTCGGCCTTCACGACCGGGCAGTGCCATGTCATCGAT GGTGGCTGGTCCAACAGCTAA
Upstream 100 bases:
>100_bases CTGTCCGAGGCGCTCGGCCATCAGGAATTCATCCTCACCTACAAGCAGTTCGAGCCCAGCGGTCCGGCCTGCCAGCCTGC CATTGCCTGACGGAGCGACC
Downstream 100 bases:
>100_bases AGAACGATAACGACGAAAGCGGAGGGGAAAATGGCGCTGACAGGGTCCGGAACGATCGAGGACAACGAGCAGACGAGCGG AGAGCCGCTGGTCACGCGCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MTTTFDLSGKRALVTGAGQGIGRASAEAFRDAGADVLATDLNPHALASLDGCRSRVLDVTDAAAIAAMVAEEDGFDVVFN CAGVVHNGTILDCTDADWAFALDLNVTAMFRMTRAILPGMIARGGGSIINMASVASSILGVANRFAYGASKAAVIGLTKA VAADFVQQGVRCNAICPGTVHSPSLEQRLAATGDFNAAMAAFTARQPMGRIGRPDEIAALALYLASDASAFTTGQCHVID GGWSNS
Sequences:
>Translated_246_residues MTTTFDLSGKRALVTGAGQGIGRASAEAFRDAGADVLATDLNPHALASLDGCRSRVLDVTDAAAIAAMVAEEDGFDVVFN CAGVVHNGTILDCTDADWAFALDLNVTAMFRMTRAILPGMIARGGGSIINMASVASSILGVANRFAYGASKAAVIGLTKA VAADFVQQGVRCNAICPGTVHSPSLEQRLAATGDFNAAMAAFTARQPMGRIGRPDEIAALALYLASDASAFTTGQCHVID GGWSNS >Mature_245_residues TTTFDLSGKRALVTGAGQGIGRASAEAFRDAGADVLATDLNPHALASLDGCRSRVLDVTDAAAIAAMVAEEDGFDVVFNC AGVVHNGTILDCTDADWAFALDLNVTAMFRMTRAILPGMIARGGGSIINMASVASSILGVANRFAYGASKAAVIGLTKAV AADFVQQGVRCNAICPGTVHSPSLEQRLAATGDFNAAMAAFTARQPMGRIGRPDEIAALALYLASDASAFTTGQCHVIDG GWSNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI66933014, Length=241, Percent_Identity=53.1120331950208, Blast_Score=247, Evalue=7e-66, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=31.7460317460317, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=31.640625, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=31.404958677686, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI59889578, Length=224, Percent_Identity=33.4821428571429, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=27.0588235294118, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI31542939, Length=199, Percent_Identity=35.1758793969849, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=29.6875, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI142976729, Length=236, Percent_Identity=29.6610169491525, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI126723750, Length=260, Percent_Identity=27.6923076923077, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=26.4227642276423, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=26.7015706806283, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4504505, Length=266, Percent_Identity=27.4436090225564, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=30.6878306878307, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI210032112, Length=179, Percent_Identity=26.2569832402235, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=28.90625, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40807363, Length=201, Percent_Identity=29.3532338308458, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=31.413612565445, Blast_Score=69, Evalue=5e-12, Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=39.3574297188755, Blast_Score=171, Evalue=4e-44, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=35.1778656126482, Blast_Score=121, Evalue=4e-29, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=31.3492063492063, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=31.1023622047244, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=31.1023622047244, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=30.1158301158301, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=32.258064516129, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=30.2788844621514, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=30.241935483871, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=28.4552845528455, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=27.8008298755187, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=34.4262295081967, Blast_Score=76, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=31.1740890688259, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=30.8, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=32.2834645669291, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=31.6, Blast_Score=98, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=31.0756972111554, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=31.2977099236641, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=30.2583025830258, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=27.6, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=29.9242424242424, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=28.957528957529, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.8389513108614, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=29.1666666666667, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=28.8461538461538, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=29.7297297297297, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=28.125, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=28.4046692607004, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193203115, Length=191, Percent_Identity=29.3193717277487, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17508895, Length=205, Percent_Identity=27.8048780487805, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=29.5019157088123, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=27.7153558052434, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=27.3764258555133, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17564282, Length=227, Percent_Identity=27.3127753303965, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=28.2442748091603, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538182, Length=269, Percent_Identity=27.8810408921933, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=27.5471698113208, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17568967, Length=264, Percent_Identity=28.4090909090909, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=29.8449612403101, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=26.6409266409266, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=25.5725190839695, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17561272, Length=93, Percent_Identity=38.7096774193548, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=27.319587628866, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=33.596837944664, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=33.7349397590361, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=32.1138211382114, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=29.3436293436293, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI21357041, Length=182, Percent_Identity=31.3186813186813, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644337, Length=255, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=31.2169312169312, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=27.6422764227642, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24640492, Length=181, Percent_Identity=29.2817679558011, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=30.7086614173228, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI281364892, Length=181, Percent_Identity=28.1767955801105, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581726, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25203; Mature: 25072
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTFDLSGKRALVTGAGQGIGRASAEAFRDAGADVLATDLNPHALASLDGCRSRVLDVT CCEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCHH DAAAIAAMVAEEDGFDVVFNCAGVVHNGTILDCTDADWAFALDLNVTAMFRMTRAILPGM HHHHHHHHHHCCCCCEEEEEECEEEECCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHH IARGGGSIINMASVASSILGVANRFAYGASKAAVIGLTKAVAADFVQQGVRCNAICPGTV HHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEECEECCCCC HSPSLEQRLAATGDFNAAMAAFTARQPMGRIGRPDEIAALALYLASDASAFTTGQCHVID CCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCEEEEEC GGWSNS CCCCCC >Mature Secondary Structure TTTFDLSGKRALVTGAGQGIGRASAEAFRDAGADVLATDLNPHALASLDGCRSRVLDVT CEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCHH DAAAIAAMVAEEDGFDVVFNCAGVVHNGTILDCTDADWAFALDLNVTAMFRMTRAILPGM HHHHHHHHHHCCCCCEEEEEECEEEECCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHH IARGGGSIINMASVASSILGVANRFAYGASKAAVIGLTKAVAADFVQQGVRCNAICPGTV HHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEECEECCCCC HSPSLEQRLAATGDFNAAMAAFTARQPMGRIGRPDEIAALALYLASDASAFTTGQCHVID CCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCEEEEEC GGWSNS CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]