| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is lysK
Identifier: 87200373
GI number: 87200373
Start: 2506853
End: 2508457
Strand: Reverse
Name: lysK
Synonym: Saro_2360
Alternate gene names: 87200373
Gene position: 2508457-2506853 (Counterclockwise)
Preceding gene: 87200374
Following gene: 87200366
Centisome position: 70.43
GC content: 62.87
Gene sequence:
>1605_bases ATGACAGACGAGATCCGCACCGCCGCCCAGACGTCGAAGGCCTGGCCCTTCGAGGAAGCCCGCAAGCTCATCAAGCGGTT TCCCGGCGGCAAACGCGATGCGTCGGGCAATCTCGTCCCCGTGCTTTTCGAAACCGGATATGGTCCTTCGGGCCTGCCGC ACATCGGCACTTTCCAGGAAGTCCTGCGGACCACGCTTGTCCGCCGCGCCTACGAGGTGCTGACCGGTGGCCATCCCACG CGGCTGGTCGCCTTTTCGGACGACATGGACGGCCTGCGCAAGGTGCCGGACAACGTGCCGAACAAGGCGTTGCTCGAAGC ACACCTCGGCCATCCGCTCAGCCGCATTCCAGATCCTTTCGAGAAGTTTGAAAGCTTCGCCCACCACAACAACGCGATGC TGCGTGACTTCCTCGATCGCTTCGGCTTCGACTACGAATTCGTCTCCGCTTCGGATCGCTACAATTCTGGTGCGTTCGAC GATGCGCTGAAGAACGTTCTGCGCAACTGGCAGGCGATCATGGACATCATGCTCCCGACCCTGCGCGAGGAGCGTCGCAA GACCTACTCGCCGGTCCTGCCGGTCTCCCCGACGACGGGCGAGGTGTTGCAGGTTGCGGTTGAAGTGGTCGATGCCGAAG CCGGCATCGTGCGCTTTGTCGACAGCAACGGCGAAACCGTCGAGCACACCATTCTCGGCGGCTGGTCCAAGCTGCAATGG AAGGTCGACTGGGCAATGCGCTGGGTCGCGCTTGGTGTCGACTACGAAATGTGCGGCAAGGACCTCACCGACAGCGTCAC CCAGTCGGGCAAGATTGCCCGCGTCCTCGGCGGGCAGCGTCCCGAAGGGCTGATCTACGAACTCTTCCTCGACGAGAAGG GCGAGAAGATCTCCAAGTCCAAGGGCAACGGCCTGACGATCGAGCAGTGGCTGGAATACGGCAGCGAGGAATCGCTCGGT TTCTACCTGTTCCGCGAACCCAAGAGCGCCAAGTCGCTTCACGTCGGGATCATCCCGCGCGCGGTCGACGAATACTGGCA GTTCCGCGAGAAGCTGCCGACACAGCCGGTCGAGCAGCAACTTGGCAATCCTGTCTGGCACCTCCTGCGCGCCAATGGCT ATCAGGGCGGCGACGGCGAGAAGTTGCCGGTTACCTATGGCCTTCTGCTCAACCTCGTTGGCGTGCTCGGCGCGCAGGCG ACGCGCGATCAGGTCTGGTCCTACCTTGGCAATTATGTCGAGAACGCTGATCCTGCCGCGCACCCGGCACTCGACGGTCT GGTCACTCGCGCGCTCGCCTACAACCGCGATTTCATCGCGCCCACGCTCCTGCGCCGCAAGCCGGAAGCGAACGAGCTTC TGGCGCTTTCCGCGCTGGACGAGGAACTTGCCGGGACGTCCGACGACGCTACCGCCGAGGAACTCCAGAACATCGTCTAC GAAATCGGCAAGGACCCGCACTACGGGTTCGAGCAGCTCCGGGACTGGTTCAAGTGCCTTTACGAAACCCTGCTCGGTTC CAGCGCGGGGCCGCGGATGGGCAGCTTCATCGCGCTCTATGGCGTTGCCAACACGCGCAAGCTGATTGCCGAGGCGCTCG ACTGA
Upstream 100 bases:
>100_bases ACATGCCGCACCCGACGACGAACGCCAGGGAAGGGGGTGGCACCCGCCGGCCCCGTTTTCGCTTGCGAAAGCCGCCCCTC CGCGCAAAAGGGCGGGCACC
Downstream 100 bases:
>100_bases GCGCTCAGTCCAGAATGATGTGAGGCACGAAGCGGGCGCGGTTGCCGGTGATCAGGCCATCCTCGCGGATGCCCAGGCCG GCCGCCTCGCCCGCTACGAT
Product: lysyl-tRNA synthetase
Products: NA
Alternate protein names: Lysine--tRNA ligase; LysRS [H]
Number of amino acids: Translated: 534; Mature: 533
Protein sequence:
>534_residues MTDEIRTAAQTSKAWPFEEARKLIKRFPGGKRDASGNLVPVLFETGYGPSGLPHIGTFQEVLRTTLVRRAYEVLTGGHPT RLVAFSDDMDGLRKVPDNVPNKALLEAHLGHPLSRIPDPFEKFESFAHHNNAMLRDFLDRFGFDYEFVSASDRYNSGAFD DALKNVLRNWQAIMDIMLPTLREERRKTYSPVLPVSPTTGEVLQVAVEVVDAEAGIVRFVDSNGETVEHTILGGWSKLQW KVDWAMRWVALGVDYEMCGKDLTDSVTQSGKIARVLGGQRPEGLIYELFLDEKGEKISKSKGNGLTIEQWLEYGSEESLG FYLFREPKSAKSLHVGIIPRAVDEYWQFREKLPTQPVEQQLGNPVWHLLRANGYQGGDGEKLPVTYGLLLNLVGVLGAQA TRDQVWSYLGNYVENADPAAHPALDGLVTRALAYNRDFIAPTLLRRKPEANELLALSALDEELAGTSDDATAEELQNIVY EIGKDPHYGFEQLRDWFKCLYETLLGSSAGPRMGSFIALYGVANTRKLIAEALD
Sequences:
>Translated_534_residues MTDEIRTAAQTSKAWPFEEARKLIKRFPGGKRDASGNLVPVLFETGYGPSGLPHIGTFQEVLRTTLVRRAYEVLTGGHPT RLVAFSDDMDGLRKVPDNVPNKALLEAHLGHPLSRIPDPFEKFESFAHHNNAMLRDFLDRFGFDYEFVSASDRYNSGAFD DALKNVLRNWQAIMDIMLPTLREERRKTYSPVLPVSPTTGEVLQVAVEVVDAEAGIVRFVDSNGETVEHTILGGWSKLQW KVDWAMRWVALGVDYEMCGKDLTDSVTQSGKIARVLGGQRPEGLIYELFLDEKGEKISKSKGNGLTIEQWLEYGSEESLG FYLFREPKSAKSLHVGIIPRAVDEYWQFREKLPTQPVEQQLGNPVWHLLRANGYQGGDGEKLPVTYGLLLNLVGVLGAQA TRDQVWSYLGNYVENADPAAHPALDGLVTRALAYNRDFIAPTLLRRKPEANELLALSALDEELAGTSDDATAEELQNIVY EIGKDPHYGFEQLRDWFKCLYETLLGSSAGPRMGSFIALYGVANTRKLIAEALD >Mature_533_residues TDEIRTAAQTSKAWPFEEARKLIKRFPGGKRDASGNLVPVLFETGYGPSGLPHIGTFQEVLRTTLVRRAYEVLTGGHPTR LVAFSDDMDGLRKVPDNVPNKALLEAHLGHPLSRIPDPFEKFESFAHHNNAMLRDFLDRFGFDYEFVSASDRYNSGAFDD ALKNVLRNWQAIMDIMLPTLREERRKTYSPVLPVSPTTGEVLQVAVEVVDAEAGIVRFVDSNGETVEHTILGGWSKLQWK VDWAMRWVALGVDYEMCGKDLTDSVTQSGKIARVLGGQRPEGLIYELFLDEKGEKISKSKGNGLTIEQWLEYGSEESLGF YLFREPKSAKSLHVGIIPRAVDEYWQFREKLPTQPVEQQLGNPVWHLLRANGYQGGDGEKLPVTYGLLLNLVGVLGAQAT RDQVWSYLGNYVENADPAAHPALDGLVTRALAYNRDFIAPTLLRRKPEANELLALSALDEELAGTSDDATAEELQNIVYE IGKDPHYGFEQLRDWFKCLYETLLGSSAGPRMGSFIALYGVANTRKLIAEALD
Specific function: Unknown
COG id: COG1384
COG function: function code J; Lysyl-tRNA synthetase (class I)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR002904 - InterPro: IPR020754 - InterPro: IPR020756 - InterPro: IPR014729 [H]
Pfam domain/function: PF01921 tRNA-synt_1f [H]
EC number: =6.1.1.6 [H]
Molecular weight: Translated: 59651; Mature: 59520
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDEIRTAAQTSKAWPFEEARKLIKRFPGGKRDASGNLVPVLFETGYGPSGLPHIGTFQE CCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH VLRTTLVRRAYEVLTGGHPTRLVAFSDDMDGLRKVPDNVPNKALLEAHLGHPLSRIPDPF HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCHH EKFESFAHHNNAMLRDFLDRFGFDYEFVSASDRYNSGAFDDALKNVLRNWQAIMDIMLPT HHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LREERRKTYSPVLPVSPTTGEVLQVAVEVVDAEAGIVRFVDSNGETVEHTILGGWSKLQW HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHEEECCCHHEEE KVDWAMRWVALGVDYEMCGKDLTDSVTQSGKIARVLGGQRPEGLIYELFLDEKGEKISKS EHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCHHHHCCCCCCCEEEEEEECCCCCHHHCC KGNGLTIEQWLEYGSEESLGFYLFREPKSAKSLHVGIIPRAVDEYWQFREKLPTQPVEQQ CCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHH LGNPVWHLLRANGYQGGDGEKLPVTYGLLLNLVGVLGAQATRDQVWSYLGNYVENADPAA HCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH HPALDGLVTRALAYNRDFIAPTLLRRKPEANELLALSALDEELAGTSDDATAEELQNIVY HHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHEEHHHHHHHHHCCCCCCHHHHHHHHHHH EIGKDPHYGFEQLRDWFKCLYETLLGSSAGPRMGSFIALYGVANTRKLIAEALD HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHCC >Mature Secondary Structure TDEIRTAAQTSKAWPFEEARKLIKRFPGGKRDASGNLVPVLFETGYGPSGLPHIGTFQE CCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH VLRTTLVRRAYEVLTGGHPTRLVAFSDDMDGLRKVPDNVPNKALLEAHLGHPLSRIPDPF HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCHH EKFESFAHHNNAMLRDFLDRFGFDYEFVSASDRYNSGAFDDALKNVLRNWQAIMDIMLPT HHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LREERRKTYSPVLPVSPTTGEVLQVAVEVVDAEAGIVRFVDSNGETVEHTILGGWSKLQW HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHEEECCCHHEEE KVDWAMRWVALGVDYEMCGKDLTDSVTQSGKIARVLGGQRPEGLIYELFLDEKGEKISKS EHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCCHHHHCCCCCCCEEEEEEECCCCCHHHCC KGNGLTIEQWLEYGSEESLGFYLFREPKSAKSLHVGIIPRAVDEYWQFREKLPTQPVEQQ CCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHH LGNPVWHLLRANGYQGGDGEKLPVTYGLLLNLVGVLGAQATRDQVWSYLGNYVENADPAA HCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH HPALDGLVTRALAYNRDFIAPTLLRRKPEANELLALSALDEELAGTSDDATAEELQNIVY HHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHEEHHHHHHHHHCCCCCCHHHHHHHHHHH EIGKDPHYGFEQLRDWFKCLYETLLGSSAGPRMGSFIALYGVANTRKLIAEALD HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA