Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is cvpA [C]
Identifier: 87199972
GI number: 87199972
Start: 2073483
End: 2074037
Strand: Reverse
Name: cvpA [C]
Synonym: Saro_1955
Alternate gene names: 87199972
Gene position: 2074037-2073483 (Counterclockwise)
Preceding gene: 87199973
Following gene: 87199971
Centisome position: 58.23
GC content: 63.06
Gene sequence:
>555_bases ATGACCGGGTTCGATTATGTGGTCCTTCTCCTCGTCGGCCTGGGTGCCGTCGGCGGCTTCTTTCGCGGCTTCGTGGAGGA AGTGCTCTCGCTTGCCGCCTGGTGCCTTGCGCTGCTCGCGGTCCACTATTTTCACGAACCTCTGACATACTATCTCGCGT CGCACCTGCCGACCGAAACTGGTGCGGGCGTGCTGGCCTTTTTCCTGCTTTTGCTGGCTCCCTACCTGCTGACCCGCTTC ATCGCGCGCCGGATGGGCAGCGCCAGCCGAGGTTCGGCCATCGGCCCGATCGATCGTATCCTCGGCTTCGGATTCGGGGC GGTGAAGGGCTTCATTATCGTCGTCCTCGGTTATTCCATTGTCGTTTTCGGCTACGATCTGGTCTGGGGCGCGAACGGAC GTCCGCAATGGATCGTCGAGTCCCGGACCTATCCGTTCCTGAATGCGGCGAGCGAGGAATTGCTCACGCTTATCTCCGAG CGGCGGGAGCAAGCCGCCGATCAGGCGCGCGAAGTCGCCCGACGCAAGGCGCGTGCCGCCGTCCTGGGTGACTGA
Upstream 100 bases:
>100_bases AGCCGGTGCGGAAAAGGTCGATGGACTGCGCTATTCGCCGCTCAGGCTGCTGCCAAATCTGATTGACCGGGTCATGGGCG GCTCATAGGGTCCAGAGCCA
Downstream 100 bases:
>100_bases TATGGCTTCGCGCCCATCGTCGGGTGGACAAGGGCTATACACCCCCGAGATTCTCGCCGCCGCCATGGAACTCGCGCAGT ATCCGTGGAACGATGCGCTG
Product: colicin V production protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MTGFDYVVLLLVGLGAVGGFFRGFVEEVLSLAAWCLALLAVHYFHEPLTYYLASHLPTETGAGVLAFFLLLLAPYLLTRF IARRMGSASRGSAIGPIDRILGFGFGAVKGFIIVVLGYSIVVFGYDLVWGANGRPQWIVESRTYPFLNAASEELLTLISE RREQAADQAREVARRKARAAVLGD
Sequences:
>Translated_184_residues MTGFDYVVLLLVGLGAVGGFFRGFVEEVLSLAAWCLALLAVHYFHEPLTYYLASHLPTETGAGVLAFFLLLLAPYLLTRF IARRMGSASRGSAIGPIDRILGFGFGAVKGFIIVVLGYSIVVFGYDLVWGANGRPQWIVESRTYPFLNAASEELLTLISE RREQAADQAREVARRKARAAVLGD >Mature_183_residues TGFDYVVLLLVGLGAVGGFFRGFVEEVLSLAAWCLALLAVHYFHEPLTYYLASHLPTETGAGVLAFFLLLLAPYLLTRFI ARRMGSASRGSAIGPIDRILGFGFGAVKGFIIVVLGYSIVVFGYDLVWGANGRPQWIVESRTYPFLNAASEELLTLISER REQAADQAREVARRKARAAVLGD
Specific function: Required For Colicin V Production From Plasmid Incfi Colv3-K30. [C]
COG id: COG1286
COG function: function code R; Uncharacterized membrane protein, required for colicin V production
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20104; Mature: 19973
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGFDYVVLLLVGLGAVGGFFRGFVEEVLSLAAWCLALLAVHYFHEPLTYYLASHLPTET CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAGVLAFFLLLLAPYLLTRFIARRMGSASRGSAIGPIDRILGFGFGAVKGFIIVVLGYSI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH VVFGYDLVWGANGRPQWIVESRTYPFLNAASEELLTLISERREQAADQAREVARRKARAA HHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLGD HCCC >Mature Secondary Structure TGFDYVVLLLVGLGAVGGFFRGFVEEVLSLAAWCLALLAVHYFHEPLTYYLASHLPTET CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAGVLAFFLLLLAPYLLTRFIARRMGSASRGSAIGPIDRILGFGFGAVKGFIIVVLGYSI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH VVFGYDLVWGANGRPQWIVESRTYPFLNAASEELLTLISERREQAADQAREVARRKARAA HHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLGD HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA