Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is ycfH [C]
Identifier: 87199955
GI number: 87199955
Start: 2053220
End: 2053999
Strand: Reverse
Name: ycfH [C]
Synonym: Saro_1938
Alternate gene names: 87199955
Gene position: 2053999-2053220 (Counterclockwise)
Preceding gene: 87199956
Following gene: 87199954
Centisome position: 57.67
GC content: 61.03
Gene sequence:
>780_bases ATGATGCTGATCGATTCCCACTGCCACCTGAACTACAAGGGACTTGTCGAAGATCAGCGGCAAGTGCTTGACCGCGCCAG AGAAAATGGCGTGCGTGGTTTCCTGAATATCTCCACGAGGCGTAGCGAGTGGGATGCCATCGTCGGTACTGCGGAGCGTG AAAGCGACGTCTGGGCCAGCATCGGCATTCACCCGCACGAGGCCGATGCCCACGCCGACCTTGGCGAAGCGGCCCTTCTT CAGGCGGCGCGACACCCGCGGGTAATCGGGATCGGCGAGACCGGGCTCGACTACTTCTACGACCACTCCGACCGGCAGGT TCAGCAGGACCTGTTCCGTGTGCACATTCGCGTGGCACGGGAAACTGGCCTGCCGCTCATCATCCACACCCGGGATGCCG AGGACGACACTACCAGGATCATCGAGGAAGAGATGGGGAAGGGGGCGTTCCCTGCGTTGATCCACTGCTTCACCGCATCG GCCGCATTTGGGGCGCGAATGCTGGAATTGGGGCTTTCCATTTCGCTTTCGGGTATCGTGACCTTCAAGAATGCCAAGGA TCTGCAGGCGGTTGCGGCCAGCATTCCGGACGACCGAATCCTGGTTGAGACGGACGCTCCCTTCCTTGCACCGGTGCCGC ATCGCGGAAAAACATGCGAGCCTGCGTTTGTCGCCGACACGTGCGCATTCGTGGCGGGCTTGCGCGGAACCAGCACGCAA GCGCTGGCCGATGTTACCGGCCGGAACTTCTTCCGTCTGTTTTCGAAGGCTTCGTTGTGA
Upstream 100 bases:
>100_bases ATGCGGACTGGTACATGGCACGCGTGGCAACCGGAGAGAGGCTTGCGCAGCCCATGCCTGCATTCCCCCGCCTTGAACTG CCGGAGGAGGAAGGATCGGC
Downstream 100 bases:
>100_bases AGCTGACCATTCTGGGTTCAGGCACGTCGACCGGCGTTCCGAGGATCGGCAACGACTGGGGCGATTGCGATCCGAACGAG CCGCGCAACCGCAGGACCCG
Product: TatD-related deoxyribonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MMLIDSHCHLNYKGLVEDQRQVLDRARENGVRGFLNISTRRSEWDAIVGTAERESDVWASIGIHPHEADAHADLGEAALL QAARHPRVIGIGETGLDYFYDHSDRQVQQDLFRVHIRVARETGLPLIIHTRDAEDDTTRIIEEEMGKGAFPALIHCFTAS AAFGARMLELGLSISLSGIVTFKNAKDLQAVAASIPDDRILVETDAPFLAPVPHRGKTCEPAFVADTCAFVAGLRGTSTQ ALADVTGRNFFRLFSKASL
Sequences:
>Translated_259_residues MMLIDSHCHLNYKGLVEDQRQVLDRARENGVRGFLNISTRRSEWDAIVGTAERESDVWASIGIHPHEADAHADLGEAALL QAARHPRVIGIGETGLDYFYDHSDRQVQQDLFRVHIRVARETGLPLIIHTRDAEDDTTRIIEEEMGKGAFPALIHCFTAS AAFGARMLELGLSISLSGIVTFKNAKDLQAVAASIPDDRILVETDAPFLAPVPHRGKTCEPAFVADTCAFVAGLRGTSTQ ALADVTGRNFFRLFSKASL >Mature_259_residues MMLIDSHCHLNYKGLVEDQRQVLDRARENGVRGFLNISTRRSEWDAIVGTAERESDVWASIGIHPHEADAHADLGEAALL QAARHPRVIGIGETGLDYFYDHSDRQVQQDLFRVHIRVARETGLPLIIHTRDAEDDTTRIIEEEMGKGAFPALIHCFTAS AAFGARMLELGLSISLSGIVTFKNAKDLQAVAASIPDDRILVETDAPFLAPVPHRGKTCEPAFVADTCAFVAGLRGTSTQ ALADVTGRNFFRLFSKASL
Specific function: Unknown
COG id: COG0084
COG function: function code L; Mg-dependent DNase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tatD DNase family [H]
Homologues:
Organism=Homo sapiens, GI225903424, Length=220, Percent_Identity=29.5454545454545, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=25.0936329588015, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=24.7191011235955, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=25.6410256410256, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=26.5625, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI14042943, Length=207, Percent_Identity=25.1207729468599, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=25.8771929824561, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=41.2451361867704, Blast_Score=189, Evalue=2e-49, Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=28.4046692607004, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=29.1187739463602, Blast_Score=111, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17559024, Length=281, Percent_Identity=27.4021352313167, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17543026, Length=295, Percent_Identity=26.7796610169492, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=25.8555133079848, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17565396, Length=210, Percent_Identity=29.5238095238095, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24648690, Length=287, Percent_Identity=27.5261324041812, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI221330018, Length=273, Percent_Identity=27.1062271062271, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24586117, Length=273, Percent_Identity=27.1062271062271, Blast_Score=82, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015992 - InterPro: IPR001130 - InterPro: IPR018228 - InterPro: IPR012278 - InterPro: IPR015991 [H]
Pfam domain/function: PF01026 TatD_DNase [H]
EC number: 3.1.21.- [C]
Molecular weight: Translated: 28445; Mature: 28445
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLIDSHCHLNYKGLVEDQRQVLDRARENGVRGFLNISTRRSEWDAIVGTAERESDVWAS CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHEECCCCCCCCEEE IGIHPHEADAHADLGEAALLQAARHPRVIGIGETGLDYFYDHSDRQVQQDLFRVHIRVAR CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH ETGLPLIIHTRDAEDDTTRIIEEEMGKGAFPALIHCFTASAAFGARMLELGLSISLSGIV CCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEE TFKNAKDLQAVAASIPDDRILVETDAPFLAPVPHRGKTCEPAFVADTCAFVAGLRGTSTQ EECCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHH ALADVTGRNFFRLFSKASL HHHHHHCHHHHHHHHHCCC >Mature Secondary Structure MMLIDSHCHLNYKGLVEDQRQVLDRARENGVRGFLNISTRRSEWDAIVGTAERESDVWAS CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHEECCCCCCCCEEE IGIHPHEADAHADLGEAALLQAARHPRVIGIGETGLDYFYDHSDRQVQQDLFRVHIRVAR CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH ETGLPLIIHTRDAEDDTTRIIEEEMGKGAFPALIHCFTASAAFGARMLELGLSISLSGIV CCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEE TFKNAKDLQAVAASIPDDRILVETDAPFLAPVPHRGKTCEPAFVADTCAFVAGLRGTSTQ EECCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHH ALADVTGRNFFRLFSKASL HHHHHHCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]