Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87199941
Identifier: 87199941
GI number: 87199941
Start: 2036054
End: 2036623
Strand: Reverse
Name: 87199941
Synonym: Saro_1924
Alternate gene names: NA
Gene position: 2036623-2036054 (Counterclockwise)
Preceding gene: 87199942
Following gene: 87199940
Centisome position: 57.18
GC content: 64.39
Gene sequence:
>570_bases ATGAGGCTTTCCCGTAATCTTCTCGCGCTGGGCGCGGGCCTTGCGATCGCCCAGGCCCAAGTGGCCCAGGCTGCCGCCGC TGCGCCTGACTGCCTCAGCGAAGGCGAGATGAACGCGCTGGTTGGCTATGCGCTGCCTTCGGTCATCGACGGCGCGATGA AGGCCTGCAGCCCCCACCTTTCGCCGAACGGATATTTCGCCACGCGCGGCGGCGAGTTCCTCGGTCGCTATGCCTCGCGC AAGGATGCCAATTGGCCTCTTGCCAAGGCCGCCTTCCTGAAACTGGGCAGCAGCAAGGACGCGAAGCTTGCCGACACCGT GAAGGACCTGCCCGACGCCGCAGTGCAGCCTTTCGTGGAAGCCATGGTGAGCGAGATGGTTGGCGACCAGATCAAGCCTG ACCAGTGCACCGCGATCGAGCGCGGCGTACGCATCCTCTCTCCCCTGCCTCCGGAAAACACGGCGGAACTGATCACTTTC GTGGTGCTTCTCGTCGACAAGCCGAAAGCGGGCAAGGCCTCGTCGTTGCCAATCTGCCAGGCCGCAAGGCCCGGTATCGG GGCGAAGTAA
Upstream 100 bases:
>100_bases ACGACGACGGAACGCCTTGGACTGACTGGTCGGGGCGAAGGCATAGCGGCGCAGGCCGTGGCAACAGTTGTCTCGGGCTG AGCCTGCAGGAGCTTGTAAT
Downstream 100 bases:
>100_bases GGTCATGGACAGCATTCTCCCCCCCGAAATTGGCGCCCTCGCGCGCCGCGTGATCGAAGAGAACGCAGCGCTCGGACGGA CCGTGGCGGTTGCGGAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MRLSRNLLALGAGLAIAQAQVAQAAAAAPDCLSEGEMNALVGYALPSVIDGAMKACSPHLSPNGYFATRGGEFLGRYASR KDANWPLAKAAFLKLGSSKDAKLADTVKDLPDAAVQPFVEAMVSEMVGDQIKPDQCTAIERGVRILSPLPPENTAELITF VVLLVDKPKAGKASSLPICQAARPGIGAK
Sequences:
>Translated_189_residues MRLSRNLLALGAGLAIAQAQVAQAAAAAPDCLSEGEMNALVGYALPSVIDGAMKACSPHLSPNGYFATRGGEFLGRYASR KDANWPLAKAAFLKLGSSKDAKLADTVKDLPDAAVQPFVEAMVSEMVGDQIKPDQCTAIERGVRILSPLPPENTAELITF VVLLVDKPKAGKASSLPICQAARPGIGAK >Mature_189_residues MRLSRNLLALGAGLAIAQAQVAQAAAAAPDCLSEGEMNALVGYALPSVIDGAMKACSPHLSPNGYFATRGGEFLGRYASR KDANWPLAKAAFLKLGSSKDAKLADTVKDLPDAAVQPFVEAMVSEMVGDQIKPDQCTAIERGVRILSPLPPENTAELITF VVLLVDKPKAGKASSLPICQAARPGIGAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19657; Mature: 19657
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSRNLLALGAGLAIAQAQVAQAAAAAPDCLSEGEMNALVGYALPSVIDGAMKACSPHL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC SPNGYFATRGGEFLGRYASRKDANWPLAKAAFLKLGSSKDAKLADTVKDLPDAAVQPFVE CCCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHH AMVSEMVGDQIKPDQCTAIERGVRILSPLPPENTAELITFVVLLVDKPKAGKASSLPICQ HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH AARPGIGAK HCCCCCCCC >Mature Secondary Structure MRLSRNLLALGAGLAIAQAQVAQAAAAAPDCLSEGEMNALVGYALPSVIDGAMKACSPHL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC SPNGYFATRGGEFLGRYASRKDANWPLAKAAFLKLGSSKDAKLADTVKDLPDAAVQPFVE CCCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHH AMVSEMVGDQIKPDQCTAIERGVRILSPLPPENTAELITFVVLLVDKPKAGKASSLPICQ HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH AARPGIGAK HCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA