Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is iorB [H]
Identifier: 87199719
GI number: 87199719
Start: 1786675
End: 1788837
Strand: Reverse
Name: iorB [H]
Synonym: Saro_1702
Alternate gene names: 87199719
Gene position: 1788837-1786675 (Counterclockwise)
Preceding gene: 87199720
Following gene: 87199718
Centisome position: 50.23
GC content: 65.65
Gene sequence:
>2163_bases ATGACCGTCGCCGCCGGCCTCTCCCGCCGCTCGTTCCTCGTCGCCTCGCTTGCCGGAGGCGCGGTCCTGACGCTCGACGC CTCGATCGCGCTGGCGGCCCCGCAGGCGGAGATGGCGGCCGACGTGCTTAACGCATTCGTCCGGATCAATGCCGACAACA CCGTCACCATTGGCGCCAAGAACCCCGAAATCGGCCAGGGCGTGAAGGTCATGCTGCCCATGCTCATCGCCGAGGAAATG GACCTGGCGTGGGATCAGGTGAAGATCGAGCAGACCGACGCCGACGAGAAACGGTTCGGGCCACAGGTCGCTGGCGGAAG CACCGCCACACCGCGCAACTGGCTGCCCATGCGCCAGGTCGGCGCGGCGGCTCGCCAGATGCTCGTCGCAGCCGCGGCGA AGAAATGGGGCGTCGATCCGGCTGGCCTTTCGACCGCAAATGGCGCGGTGCTTCATGCGGCCAGCGGTCGCAGCGTGACT TATGCGTCGCTGGCGAAGGACGCCGCAAGCCAGCCAGCGCCGGATCTCGCCAAGGTTGCACTCAAGGACCCGGCCAGGTT CTCGATCATCGGCAAGTCGAAGCCCGGCGTCGACGTTCCCGCCATCGTGCGCGGACAACCGCTGTTCGGCATCGACACGC GCCTTACGGGAATGCTCCACGCCGCCGTGGTCAAGTGCCCCGCGCACGGTGGCACGGTTGCCTCGTTCGACGATGCGGCG GTCAAGGCGATCCCGGGCGTCGTTGCGGTTCTCGCCGTCAACAGCCGCCTCGTGCCCGAAGGCAGGCAGGATACCCTGCT GATCGTGGCCGACAGTTGGTGGAAGGCCAGCCAGGCGCGCGAAAAGCTCGCGGTGAAATGGGACGACGCGGCGGTTTCGG GCTTCTCGACCGCCGGGTACGAGGCGGCGGCGGCCAAGCTCATCGCCGCGCCCGCGCAGGTCAGCCTGTTCAAGGCCGGA AATGCCGACACCGCGATTGCCGGTGCCGCAAAGGTCGTGAAGGCCGACTACGACTATCCCTTCCTCGCCCACGCCACGCT GGAACCGCAGAACTGCACCGCGCTGTTCCAGGACGGCAAGCTCGAGATCTGGGCGCCCAGCCAGGCACCGGCCGGGGGCC GCGCCGATACGGCAAAGTTCTGCGGCCTGTCGCCGGAAGACCTCACTATCCACCTCACCCGCATAGGCGGCGGTTTCGGC CGGCGCCTGATGAACGACTACATGGTGATCGCAGGCCAGGCCGCAAAGGCGCTGCCCGGAAAGCCGGTGAAGGTCCTGTT CGACCGCACGGATGACCTGCGCCACGATTTCTACCGTCCCGCCGGCTGGCACCGCTTTACTGCCGGTCTCGACGAAACGG GCGCGCTGGTCGCACTCAAGGATCACTTCGTCACGTTCGGCAAGGATGGCAAGGCGATCCGCGCGGCGGACCTTGCGCCG ACCGAGTTTCCCGGCCCCGTCCTGCCCAATGTCGATTTCGGGACAAGCTATCTCGAAACCAACCTCGCCACGGGCTGGCT GCGCGCGCCGACCTCGAACGCTATGGCCTTCGTTTTCCAGTCCTTTCTCGACGAAGTAGCCGAAGCGGCGGGTCTCGATC TTCCCGAACTCATGCGCCGCACGCTGGGCGAGCCTCGCGAAGTGCCGGGCGGTCGCGTACCGTTCCACACCGGCCGTGCC CGGGGCGTGATCGACGCTGTTTGCAGGACCGCCGGCTGGAAAGGCCGGAAAAAGGGACGCGGCTTCGGTTTCTACTTTAG CCACCTTGGCTACTTCGCTGAAGTAGTTGATCTTTCCATAGCCGATGGTGTTGTCAGGATCGACAAGGTCTGGGTCGCGG GAGACGTCGGTTCGCAGATCATCAATCCGGTAAACGCACTCCACCAGGTGCAGGGTGCGACGATCGAAGGGATCGGCCAG GCCTTGGTCAACCAGAAGATCGAGCAGGAAAATGGCGCCGTAACCGCCGGGAATTTTGGCGATTATTCCCCGATCCGGAT CGATGCCGTGCCACGCGAGATCGCGGTGGAATGGGTGAAGACCGACTTCGCCCCGACAGGGCTCGGCGAACCGGCCCTTC CCCCCGTGATCCCGGCCATCGCGAATGCCATCTATTCGATCACCGGAAAGCGTCATCGCCGTCTGCCGCTGGAGATGCTA TAG
Upstream 100 bases:
>100_bases GCTGCGCCACTTACCTGCGCATCCGCGCCGCCATCCGCCAGGCCGCCGGGCTCCCGGCCGAGATCGCCGATGCAGGCAAC GCCTTCGGGGAGGCCTCGGC
Downstream 100 bases:
>100_bases GCGCCCGCCATGGTCGCCACAACGCCACTCGATATCCTGCGCTTCATCGCTTCCCGAACCGCCGAGGGGCTGGAGTGCGT GCTCGTCACGCTCGTCGGGA
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 720; Mature: 719
Protein sequence:
>720_residues MTVAAGLSRRSFLVASLAGGAVLTLDASIALAAPQAEMAADVLNAFVRINADNTVTIGAKNPEIGQGVKVMLPMLIAEEM DLAWDQVKIEQTDADEKRFGPQVAGGSTATPRNWLPMRQVGAAARQMLVAAAAKKWGVDPAGLSTANGAVLHAASGRSVT YASLAKDAASQPAPDLAKVALKDPARFSIIGKSKPGVDVPAIVRGQPLFGIDTRLTGMLHAAVVKCPAHGGTVASFDDAA VKAIPGVVAVLAVNSRLVPEGRQDTLLIVADSWWKASQAREKLAVKWDDAAVSGFSTAGYEAAAAKLIAAPAQVSLFKAG NADTAIAGAAKVVKADYDYPFLAHATLEPQNCTALFQDGKLEIWAPSQAPAGGRADTAKFCGLSPEDLTIHLTRIGGGFG RRLMNDYMVIAGQAAKALPGKPVKVLFDRTDDLRHDFYRPAGWHRFTAGLDETGALVALKDHFVTFGKDGKAIRAADLAP TEFPGPVLPNVDFGTSYLETNLATGWLRAPTSNAMAFVFQSFLDEVAEAAGLDLPELMRRTLGEPREVPGGRVPFHTGRA RGVIDAVCRTAGWKGRKKGRGFGFYFSHLGYFAEVVDLSIADGVVRIDKVWVAGDVGSQIINPVNALHQVQGATIEGIGQ ALVNQKIEQENGAVTAGNFGDYSPIRIDAVPREIAVEWVKTDFAPTGLGEPALPPVIPAIANAIYSITGKRHRRLPLEML
Sequences:
>Translated_720_residues MTVAAGLSRRSFLVASLAGGAVLTLDASIALAAPQAEMAADVLNAFVRINADNTVTIGAKNPEIGQGVKVMLPMLIAEEM DLAWDQVKIEQTDADEKRFGPQVAGGSTATPRNWLPMRQVGAAARQMLVAAAAKKWGVDPAGLSTANGAVLHAASGRSVT YASLAKDAASQPAPDLAKVALKDPARFSIIGKSKPGVDVPAIVRGQPLFGIDTRLTGMLHAAVVKCPAHGGTVASFDDAA VKAIPGVVAVLAVNSRLVPEGRQDTLLIVADSWWKASQAREKLAVKWDDAAVSGFSTAGYEAAAAKLIAAPAQVSLFKAG NADTAIAGAAKVVKADYDYPFLAHATLEPQNCTALFQDGKLEIWAPSQAPAGGRADTAKFCGLSPEDLTIHLTRIGGGFG RRLMNDYMVIAGQAAKALPGKPVKVLFDRTDDLRHDFYRPAGWHRFTAGLDETGALVALKDHFVTFGKDGKAIRAADLAP TEFPGPVLPNVDFGTSYLETNLATGWLRAPTSNAMAFVFQSFLDEVAEAAGLDLPELMRRTLGEPREVPGGRVPFHTGRA RGVIDAVCRTAGWKGRKKGRGFGFYFSHLGYFAEVVDLSIADGVVRIDKVWVAGDVGSQIINPVNALHQVQGATIEGIGQ ALVNQKIEQENGAVTAGNFGDYSPIRIDAVPREIAVEWVKTDFAPTGLGEPALPPVIPAIANAIYSITGKRHRRLPLEML >Mature_719_residues TVAAGLSRRSFLVASLAGGAVLTLDASIALAAPQAEMAADVLNAFVRINADNTVTIGAKNPEIGQGVKVMLPMLIAEEMD LAWDQVKIEQTDADEKRFGPQVAGGSTATPRNWLPMRQVGAAARQMLVAAAAKKWGVDPAGLSTANGAVLHAASGRSVTY ASLAKDAASQPAPDLAKVALKDPARFSIIGKSKPGVDVPAIVRGQPLFGIDTRLTGMLHAAVVKCPAHGGTVASFDDAAV KAIPGVVAVLAVNSRLVPEGRQDTLLIVADSWWKASQAREKLAVKWDDAAVSGFSTAGYEAAAAKLIAAPAQVSLFKAGN ADTAIAGAAKVVKADYDYPFLAHATLEPQNCTALFQDGKLEIWAPSQAPAGGRADTAKFCGLSPEDLTIHLTRIGGGFGR RLMNDYMVIAGQAAKALPGKPVKVLFDRTDDLRHDFYRPAGWHRFTAGLDETGALVALKDHFVTFGKDGKAIRAADLAPT EFPGPVLPNVDFGTSYLETNLATGWLRAPTSNAMAFVFQSFLDEVAEAAGLDLPELMRRTLGEPREVPGGRVPFHTGRAR GVIDAVCRTAGWKGRKKGRGFGFYFSHLGYFAEVVDLSIADGVVRIDKVWVAGDVGSQIINPVNALHQVQGATIEGIGQA LVNQKIEQENGAVTAGNFGDYSPIRIDAVPREIAVEWVKTDFAPTGLGEPALPPVIPAIANAIYSITGKRHRRLPLEML
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789230, Length=401, Percent_Identity=22.1945137157107, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 75974; Mature: 75842
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAAGLSRRSFLVASLAGGAVLTLDASIALAAPQAEMAADVLNAFVRINADNTVTIGAK CCCCCCCCCHHEEEEEECCCEEEEEECEEEEECCHHHHHHHHHHHHEEECCCCEEEEECC NPEIGQGVKVMLPMLIAEEMDLAWDQVKIEQTDADEKRFGPQVAGGSTATPRNWLPMRQV CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCHHHH GAAARQMLVAAAAKKWGVDPAGLSTANGAVLHAASGRSVTYASLAKDAASQPAPDLAKVA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHCCCCCCHHHHHH LKDPARFSIIGKSKPGVDVPAIVRGQPLFGIDTRLTGMLHAAVVKCPAHGGTVASFDDAA HCCCCEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHH VKAIPGVVAVLAVNSRLVPEGRQDTLLIVADSWWKASQAREKLAVKWDDAAVSGFSTAGY HHHHHHHEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHEEEEECCHHHCCCCCCCH EAAAAKLIAAPAQVSLFKAGNADTAIAGAAKVVKADYDYPFLAHATLEPQNCTALFQDGK HHHHHHHHCCCCEEEEEECCCCCCHHHCCHHEEEECCCCCEEEEEEECCCCCEEEEECCE LEIWAPSQAPAGGRADTAKFCGLSPEDLTIHLTRIGGGFGRRLMNDYMVIAGQAAKALPG EEEEECCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHCEEEEECCHHHCCCC KPVKVLFDRTDDLRHDFYRPAGWHRFTAGLDETGALVALKDHFVTFGKDGKAIRAADLAP CCEEEEECCCHHHHHHHCCCCCCCEEECCCCCCCCEEEEECCEEEECCCCCEEEEECCCC TEFPGPVLPNVDFGTSYLETNLATGWLRAPTSNAMAFVFQSFLDEVAEAAGLDLPELMRR CCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH TLGEPREVPGGRVPFHTGRARGVIDAVCRTAGWKGRKKGRGFGFYFSHLGYFAEVVDLSI HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ADGVVRIDKVWVAGDVGSQIINPVNALHQVQGATIEGIGQALVNQKIEQENGAVTAGNFG HCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCC DYSPIRIDAVPREIAVEWVKTDFAPTGLGEPALPPVIPAIANAIYSITGKRHRRLPLEML CCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHCC >Mature Secondary Structure TVAAGLSRRSFLVASLAGGAVLTLDASIALAAPQAEMAADVLNAFVRINADNTVTIGAK CCCCCCCCHHEEEEEECCCEEEEEECEEEEECCHHHHHHHHHHHHEEECCCCEEEEECC NPEIGQGVKVMLPMLIAEEMDLAWDQVKIEQTDADEKRFGPQVAGGSTATPRNWLPMRQV CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCHHHH GAAARQMLVAAAAKKWGVDPAGLSTANGAVLHAASGRSVTYASLAKDAASQPAPDLAKVA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHCCCCCCHHHHHH LKDPARFSIIGKSKPGVDVPAIVRGQPLFGIDTRLTGMLHAAVVKCPAHGGTVASFDDAA HCCCCEEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHH VKAIPGVVAVLAVNSRLVPEGRQDTLLIVADSWWKASQAREKLAVKWDDAAVSGFSTAGY HHHHHHHEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHEEEEECCHHHCCCCCCCH EAAAAKLIAAPAQVSLFKAGNADTAIAGAAKVVKADYDYPFLAHATLEPQNCTALFQDGK HHHHHHHHCCCCEEEEEECCCCCCHHHCCHHEEEECCCCCEEEEEEECCCCCEEEEECCE LEIWAPSQAPAGGRADTAKFCGLSPEDLTIHLTRIGGGFGRRLMNDYMVIAGQAAKALPG EEEEECCCCCCCCCCCCHHHCCCCCCCEEEEEEECCCHHHHHHHHCEEEEECCHHHCCCC KPVKVLFDRTDDLRHDFYRPAGWHRFTAGLDETGALVALKDHFVTFGKDGKAIRAADLAP CCEEEEECCCHHHHHHHCCCCCCCEEECCCCCCCCEEEEECCEEEECCCCCEEEEECCCC TEFPGPVLPNVDFGTSYLETNLATGWLRAPTSNAMAFVFQSFLDEVAEAAGLDLPELMRR CCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH TLGEPREVPGGRVPFHTGRARGVIDAVCRTAGWKGRKKGRGFGFYFSHLGYFAEVVDLSI HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ADGVVRIDKVWVAGDVGSQIINPVNALHQVQGATIEGIGQALVNQKIEQENGAVTAGNFG HCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCC DYSPIRIDAVPREIAVEWVKTDFAPTGLGEPALPPVIPAIANAIYSITGKRHRRLPLEML CCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]