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The map label for this gene is 87199613

Identifier: 87199613

GI number: 87199613

Start: 1658647

End: 1659384

Strand: Reverse

Name: 87199613

Synonym: Saro_1596

Alternate gene names: NA

Gene position: 1659384-1658647 (Counterclockwise)

Preceding gene: 87199614

Following gene: 87199612

Centisome position: 46.59

GC content: 68.16

Gene sequence:

>738_bases
ATGACGGCGCGCCGCAAGACCATCCTGCTGCGGGTCGTCATCGCGTTGGCAGCTCTCGCCACGATTGCCGCGAACGCGCC
GAAACTGATGCTGTTCGGCTGGCAGGCGAGCAGCATCTTTCCGGCAAGCGGCATTCCAGACCCCGCCGCCGCGAGTACTG
CCGCCGTCGTGCTTTCCGGAGACATGGGCCTGCGCTTCGGGCTCAGCGGGGACATCGCGAAGGCGCTCGCCGCGCATGGC
ATTCCTGTTACAGGCATAAGTTCCCCGGTCGCCTTCGCCCATCACCTGGACCGTGCGCAGACGGTCAAGGTGGTGCGCAA
CGCCATCGACGAAGCCTTCGCGCGGAGCGGCGCCCGCAAGGTCATACTGGTCGGACAGTCGTTCGGCGCCGACATCGCCG
CCACGGTCCTGCCCGACCTCCCCCGAAGCCAGCTCGAACGCATTGCAGGGGTGGTCCTCGTGGTGCCGTCCAACAACGTC
CACTTCCGCGCCGACCCCACCGGCATCGCCTATATGGGAGAACCCGACGCCAGGCCGGCGGCGGCACTGCGCCTCATGGC
AGCACCTCCGGTCACCTGCATCCGGGGGGCTGACGAGGCGGAAAGCCTCTGCCCGCTCCTCGGGCGCAACGACCCCGGCA
TCGTGACCCTGCCGGGCAACCACTACCTCCGCCACGATGCTCCGCGCGTGCTGCGCACCATCCTCGGCGCAGTCGACCGC
ATGACAGGGACTGTATGA

Upstream 100 bases:

>100_bases
ATCTCATCGCCAACCCGCATGTGCCGCCCCGGCCGCTGCCTTCGACCGCAAAGGCCGAACCGGGCGCGATCAAGGCCGTA
CCTTTCGCGGAGCAGGCAGC

Downstream 100 bases:

>100_bases
CCCGCCCGATCTTCTACGACCCGACCGGTCGCCGCAGCCTTCTCGCCAAGCGTTCGCTGGCAGTCGTCTTCCTTGCCGTG
ATCCTTGCGGCGCTGGCCTT

Product: Type IV secretory pathway VirJ component-like protein

Products: NA

Alternate protein names: Virulence Factor Family Protein; Type IV Secretory Pathway VirJ Component-Like Protein; Type IV Secretory Pathway VirJ Component-Like; Type IV Secretory Pathway VirJ Component; Virulence Factor

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTARRKTILLRVVIALAALATIAANAPKLMLFGWQASSIFPASGIPDPAAASTAAVVLSGDMGLRFGLSGDIAKALAAHG
IPVTGISSPVAFAHHLDRAQTVKVVRNAIDEAFARSGARKVILVGQSFGADIAATVLPDLPRSQLERIAGVVLVVPSNNV
HFRADPTGIAYMGEPDARPAAALRLMAAPPVTCIRGADEAESLCPLLGRNDPGIVTLPGNHYLRHDAPRVLRTILGAVDR
MTGTV

Sequences:

>Translated_245_residues
MTARRKTILLRVVIALAALATIAANAPKLMLFGWQASSIFPASGIPDPAAASTAAVVLSGDMGLRFGLSGDIAKALAAHG
IPVTGISSPVAFAHHLDRAQTVKVVRNAIDEAFARSGARKVILVGQSFGADIAATVLPDLPRSQLERIAGVVLVVPSNNV
HFRADPTGIAYMGEPDARPAAALRLMAAPPVTCIRGADEAESLCPLLGRNDPGIVTLPGNHYLRHDAPRVLRTILGAVDR
MTGTV
>Mature_244_residues
TARRKTILLRVVIALAALATIAANAPKLMLFGWQASSIFPASGIPDPAAASTAAVVLSGDMGLRFGLSGDIAKALAAHGI
PVTGISSPVAFAHHLDRAQTVKVVRNAIDEAFARSGARKVILVGQSFGADIAATVLPDLPRSQLERIAGVVLVVPSNNVH
FRADPTGIAYMGEPDARPAAALRLMAAPPVTCIRGADEAESLCPLLGRNDPGIVTLPGNHYLRHDAPRVLRTILGAVDRM
TGTV

Specific function: Unknown

COG id: COG3946

COG function: function code U; Type IV secretory pathway, VirJ component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25466; Mature: 25335

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARRKTILLRVVIALAALATIAANAPKLMLFGWQASSIFPASGIPDPAAASTAAVVLSG
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
DMGLRFGLSGDIAKALAAHGIPVTGISSPVAFAHHLDRAQTVKVVRNAIDEAFARSGARK
CCCEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VILVGQSFGADIAATVLPDLPRSQLERIAGVVLVVPSNNVHFRADPTGIAYMGEPDARPA
EEEEECCCCCCHHHHHCCCCCHHHHHHHCCEEEEECCCCEEEEECCCCEEEECCCCCCHH
AALRLMAAPPVTCIRGADEAESLCPLLGRNDPGIVTLPGNHYLRHDAPRVLRTILGAVDR
HHHEECCCCCHHEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
MTGTV
HHCCC
>Mature Secondary Structure 
TARRKTILLRVVIALAALATIAANAPKLMLFGWQASSIFPASGIPDPAAASTAAVVLSG
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEC
DMGLRFGLSGDIAKALAAHGIPVTGISSPVAFAHHLDRAQTVKVVRNAIDEAFARSGARK
CCCEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VILVGQSFGADIAATVLPDLPRSQLERIAGVVLVVPSNNVHFRADPTGIAYMGEPDARPA
EEEEECCCCCCHHHHHCCCCCHHHHHHHCCEEEEECCCCEEEEECCCCEEEECCCCCCHH
AALRLMAAPPVTCIRGADEAESLCPLLGRNDPGIVTLPGNHYLRHDAPRVLRTILGAVDR
HHHEECCCCCHHEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
MTGTV
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA