Definition Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome.
Accession NC_007794
Length 3,561,584

Click here to switch to the map view.

The map label for this gene is 87199592

Identifier: 87199592

GI number: 87199592

Start: 1631230

End: 1631577

Strand: Reverse

Name: 87199592

Synonym: Saro_1575

Alternate gene names: NA

Gene position: 1631577-1631230 (Counterclockwise)

Preceding gene: 87199593

Following gene: 87199591

Centisome position: 45.81

GC content: 64.08

Gene sequence:

>348_bases
ATGGCTCCCTACGACACGATAGCGCTGTTCGTAAGCGATCCTGCTGTGCTGGCCTCCTTGCAATTCGCCCTGACGGTCGA
GGGCTTCGAACCGATCGTGGAAGCAACAGAGCCGGGAGCGCGGGCGGTCGTCATCGACCGAGGCAACCTTGCCGAAGGCC
TGAAACTGCTGGACGAAATGCGCGGATCGGGCAATCAGGCCGCAGCGTTCATCCTCGCCACCTGCCCTCCGCCGAGACTG
ACGGCAACAGCCGCCGCGATGGGGGCAACACTTATCGAAAAGCCGCTGCGCGGCGACGAACTGGCCCGCGCGCTGCGGAC
CGGACTGCAAACCGAAAAGGTTGCGTGA

Upstream 100 bases:

>100_bases
GGCGGAACCCGCCGCCTGCCCGCCACACCACGCGCTTGAGCCCAACTGGAAGAAGGCTGCCTGATCGCGGCAATCTTCCG
AGGCAAGGAGGATAGGACAA

Downstream 100 bases:

>100_bases
CATGAACGATCTTTCGATCACCGAAGGCGACATCGACCGTCTGGTGCCGGAATTCTACGCCAGGGTCCGCAAGGACGAAG
TTCTCGGACCGATCTTCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MAPYDTIALFVSDPAVLASLQFALTVEGFEPIVEATEPGARAVVIDRGNLAEGLKLLDEMRGSGNQAAAFILATCPPPRL
TATAAAMGATLIEKPLRGDELARALRTGLQTEKVA

Sequences:

>Translated_115_residues
MAPYDTIALFVSDPAVLASLQFALTVEGFEPIVEATEPGARAVVIDRGNLAEGLKLLDEMRGSGNQAAAFILATCPPPRL
TATAAAMGATLIEKPLRGDELARALRTGLQTEKVA
>Mature_114_residues
APYDTIALFVSDPAVLASLQFALTVEGFEPIVEATEPGARAVVIDRGNLAEGLKLLDEMRGSGNQAAAFILATCPPPRLT
ATAAAMGATLIEKPLRGDELARALRTGLQTEKVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12006; Mature: 11875

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPYDTIALFVSDPAVLASLQFALTVEGFEPIVEATEPGARAVVIDRGNLAEGLKLLDEM
CCCCCEEEEEECCHHHHHHHHHEEEECCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH
RGSGNQAAAFILATCPPPRLTATAAAMGATLIEKPLRGDELARALRTGLQTEKVA
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
APYDTIALFVSDPAVLASLQFALTVEGFEPIVEATEPGARAVVIDRGNLAEGLKLLDEM
CCCCEEEEEECCHHHHHHHHHEEEECCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH
RGSGNQAAAFILATCPPPRLTATAAAMGATLIEKPLRGDELARALRTGLQTEKVA
CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA