Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is fhuA [H]
Identifier: 87199560
GI number: 87199560
Start: 1591258
End: 1593597
Strand: Reverse
Name: fhuA [H]
Synonym: Saro_1542
Alternate gene names: 87199560
Gene position: 1593597-1591258 (Counterclockwise)
Preceding gene: 87199564
Following gene: 87199558
Centisome position: 44.74
GC content: 62.86
Gene sequence:
>2340_bases ATGACGAATCATCGGATCATGCGCGCCGGACTCATGACTGGCGCTGCGTGCGTCGCATGCTGCGGCAGCGCGCACGGCCA GACGATGGAGGCCGCCCCATTGCAGGATCAACGCGCAGAGGCCGCGCAGCTGGGCGAAATCGTGGTCGAGGCGCGGCGGA CCCGGGAAAATCTGCAGACCACTCCTGTGGCGGTCACGGCTCTTACCGGCGAACTGCTTGCAAAGCTCAACGTGCGGGAT GTCGTAGCTACCGCGCAGTTCACGCCCAACCTCAGCATCGGCGCCCAGCCGGCGTCAATCACGGCGGCATCGGTCTATAT TCGCGGTATCGGCAATGCCTCGCCAAGCGCCGTTTCGGAGCAAGGAGTCGGCATCTATCTCGATGGCGTCTACATCGCCC GCTCCGCCGGGGCGATCTTCGACCTCGTCGACCTTGAGCGGATCGAGGTGCTACGCGGCCCGCAAGGCACCCTGTTCGGT CGCAACAGCGTCGGCGGCGCGATCCAACTGGTAAGCCGCAAGCCGGCGCAATCGCCGGGAGCGGAAGCCAAGTTCGGCTA TGGCACGTTCGAGGACTGGTTCGCCCGCGTCCGGCTCGATACCGGCCCCTTGGGCAATACCCCCTTGCGCGCCTCCGTTT CATACATGCACCGCCAGAGGAACGGCTATTTCGACAACACGCTGGCCAAATCCAGCCGTGACCCCGGCGCGCTCAACAGC GAAGCGGTGACCGCCGCGGTACAAGGCGATTTTGGTGATCTGACCGCCAATTATGCCTTCGACTACAACACCCGCGAAGG CGTGCCGGCGTTCTTCCAGGTCGTTGCGGCCAGTGACGACGTCAAAAACTACTTCGGCCAGTCGGAATCGTTTGGCGGCG CGCCGTTCCAGATCGGCCCGGTCGGCCTGCGACAAGGCCAGCAGTTGCCCGCCACGGACCTCTCCGAACGGCTGACCTTC AGCGTGAAGGCGCGGGTCTACGGCCATTCGCTGACGCTCGCGTGGCAGGCTGCGCCACACCTCACGGTCAAGTCCATCAC CGCCTATCGCAGCTATCGCCAGGACGGAGCCAACGGTCTTTCCGGGAACGGCAATATGCTTGGTTTCACACTGAGTCCGG TGCTGTTTGTCGACGGCAGCGTAGTGCCCGAAGGCATAAGTCCGGTGAACCTCTACGATGGCTATACCACCCAGCGGCAG CACCAGTTCTCGCAGGAACTGCAAATCTTTGGCGAGGCTGGGCCGATCAAGTACGTCGCGGGTGCATTCTACTTCGACGA GACATCGTCCGAGGCGAACTACCAGACCTTGTCCTACGTCCTGCCCGGTGGAGAAGCTGCGGTGAACCTCTTCCCGCTCC AGGCCTTCAACGGAAAGGCGCGTTCACATGCCGTATTCGGGCAGGTGAGCTTTTCTCCGGGCAACGGCGACTTCGAACTG ACCGGAGGCCTGCGCTACACGCACGATCGCAAGTGGCTGACGCTCGCCGGAGACGTTCAGCCAAATCTTGATGGCTCGGC AAGCTATGACAATGTCTCGTGGCTGGCCTCGGCCAGCTACCGCCTGCGCCCCGGGGTAATGGGCTACATCCGCGTTTCGA GCGGGTTCCGGGCGGGAGGCATCAATCCCTCCGCGTCGGAGATCAACGTCTTCGCGCCGGAAAAGATCGTGTCCTACGAA GCCGGGGTGAAGGCCGAATGGTTCGATCGCCGCCTGCGCACAAACCTTGCGGTCTTCCACGTCGACTATCGCAATCTCCA GATATCGCAGTTCCTCGCCGGGACCGGCGGCGCGACCTCTGCAATCGTCAACGCCGGCAAGGTCGCATATCGAGGCATCG AGGCCGAACTTACTGCCCTGCCCGCCCCGGGCCTGACGTTCGACGGCTCGCTGGGGTACACTGCCCCCAAGTACAAGACC TACTTGTATGTCGACCCGGCAACGGACGAGGTCGTCAATGTCGCCAGCGAGGCGCGAATGTCGCAGGCGGCGCGGTTCAA CGCACACGCAGGCGCACAGTACGATCACGAAGTGGGCATCGGCAGACTGTCGCTGCGTGCCGACTATTCCTATCGCAGCA CGGTGTATTGGTTCACACTGGACAGGCTGAACACCTTCAACCGCGACATACGCTCAAGACCTGACCACAACCTGCGCGCC AGGATCGCACTCGACGATATTGCTCTCGGCACGGCACGGCTCGGGCTGGGTCTGTGGGGCGACAATCTGACAGACCAGCG CAACATCGATTTCGGGATCGACTTCGGCAGCCTCGGCTACGGCAGCGCTTCGTTCAAGAAATCGCGCACGGTGGGCCTGG ATGCCCGGATCACCTACTGA
Upstream 100 bases:
>100_bases ATGTATTGTTTAAATTCGTAGCCTGTGTCAAATCTCAAGCTGCAAAATGCAGGCAAGTTCGCGTCGCGATCCTTGAACTG CGGGAAAACGGGAGGATTTC
Downstream 100 bases:
>100_bases TGCTGGCGGCGTGTCATGCCAACGAGGCGAAGTCAGGATCTGGCTTCACAACCGGCGATCAGCAACTCGACCAGTTGCTC GACGTAGGCATCGGAGGGAA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Ferric hydroxamate receptor; Ferric hydroxamate uptake [H]
Number of amino acids: Translated: 779; Mature: 778
Protein sequence:
>779_residues MTNHRIMRAGLMTGAACVACCGSAHGQTMEAAPLQDQRAEAAQLGEIVVEARRTRENLQTTPVAVTALTGELLAKLNVRD VVATAQFTPNLSIGAQPASITAASVYIRGIGNASPSAVSEQGVGIYLDGVYIARSAGAIFDLVDLERIEVLRGPQGTLFG RNSVGGAIQLVSRKPAQSPGAEAKFGYGTFEDWFARVRLDTGPLGNTPLRASVSYMHRQRNGYFDNTLAKSSRDPGALNS EAVTAAVQGDFGDLTANYAFDYNTREGVPAFFQVVAASDDVKNYFGQSESFGGAPFQIGPVGLRQGQQLPATDLSERLTF SVKARVYGHSLTLAWQAAPHLTVKSITAYRSYRQDGANGLSGNGNMLGFTLSPVLFVDGSVVPEGISPVNLYDGYTTQRQ HQFSQELQIFGEAGPIKYVAGAFYFDETSSEANYQTLSYVLPGGEAAVNLFPLQAFNGKARSHAVFGQVSFSPGNGDFEL TGGLRYTHDRKWLTLAGDVQPNLDGSASYDNVSWLASASYRLRPGVMGYIRVSSGFRAGGINPSASEINVFAPEKIVSYE AGVKAEWFDRRLRTNLAVFHVDYRNLQISQFLAGTGGATSAIVNAGKVAYRGIEAELTALPAPGLTFDGSLGYTAPKYKT YLYVDPATDEVVNVASEARMSQAARFNAHAGAQYDHEVGIGRLSLRADYSYRSTVYWFTLDRLNTFNRDIRSRPDHNLRA RIALDDIALGTARLGLGLWGDNLTDQRNIDFGIDFGSLGYGSASFKKSRTVGLDARITY
Sequences:
>Translated_779_residues MTNHRIMRAGLMTGAACVACCGSAHGQTMEAAPLQDQRAEAAQLGEIVVEARRTRENLQTTPVAVTALTGELLAKLNVRD VVATAQFTPNLSIGAQPASITAASVYIRGIGNASPSAVSEQGVGIYLDGVYIARSAGAIFDLVDLERIEVLRGPQGTLFG RNSVGGAIQLVSRKPAQSPGAEAKFGYGTFEDWFARVRLDTGPLGNTPLRASVSYMHRQRNGYFDNTLAKSSRDPGALNS EAVTAAVQGDFGDLTANYAFDYNTREGVPAFFQVVAASDDVKNYFGQSESFGGAPFQIGPVGLRQGQQLPATDLSERLTF SVKARVYGHSLTLAWQAAPHLTVKSITAYRSYRQDGANGLSGNGNMLGFTLSPVLFVDGSVVPEGISPVNLYDGYTTQRQ HQFSQELQIFGEAGPIKYVAGAFYFDETSSEANYQTLSYVLPGGEAAVNLFPLQAFNGKARSHAVFGQVSFSPGNGDFEL TGGLRYTHDRKWLTLAGDVQPNLDGSASYDNVSWLASASYRLRPGVMGYIRVSSGFRAGGINPSASEINVFAPEKIVSYE AGVKAEWFDRRLRTNLAVFHVDYRNLQISQFLAGTGGATSAIVNAGKVAYRGIEAELTALPAPGLTFDGSLGYTAPKYKT YLYVDPATDEVVNVASEARMSQAARFNAHAGAQYDHEVGIGRLSLRADYSYRSTVYWFTLDRLNTFNRDIRSRPDHNLRA RIALDDIALGTARLGLGLWGDNLTDQRNIDFGIDFGSLGYGSASFKKSRTVGLDARITY >Mature_778_residues TNHRIMRAGLMTGAACVACCGSAHGQTMEAAPLQDQRAEAAQLGEIVVEARRTRENLQTTPVAVTALTGELLAKLNVRDV VATAQFTPNLSIGAQPASITAASVYIRGIGNASPSAVSEQGVGIYLDGVYIARSAGAIFDLVDLERIEVLRGPQGTLFGR NSVGGAIQLVSRKPAQSPGAEAKFGYGTFEDWFARVRLDTGPLGNTPLRASVSYMHRQRNGYFDNTLAKSSRDPGALNSE AVTAAVQGDFGDLTANYAFDYNTREGVPAFFQVVAASDDVKNYFGQSESFGGAPFQIGPVGLRQGQQLPATDLSERLTFS VKARVYGHSLTLAWQAAPHLTVKSITAYRSYRQDGANGLSGNGNMLGFTLSPVLFVDGSVVPEGISPVNLYDGYTTQRQH QFSQELQIFGEAGPIKYVAGAFYFDETSSEANYQTLSYVLPGGEAAVNLFPLQAFNGKARSHAVFGQVSFSPGNGDFELT GGLRYTHDRKWLTLAGDVQPNLDGSASYDNVSWLASASYRLRPGVMGYIRVSSGFRAGGINPSASEINVFAPEKIVSYEA GVKAEWFDRRLRTNLAVFHVDYRNLQISQFLAGTGGATSAIVNAGKVAYRGIEAELTALPAPGLTFDGSLGYTAPKYKTY LYVDPATDEVVNVASEARMSQAARFNAHAGAQYDHEVGIGRLSLRADYSYRSTVYWFTLDRLNTFNRDIRSRPDHNLRAR IALDDIALGTARLGLGLWGDNLTDQRNIDFGIDFGSLGYGSASFKKSRTVGLDARITY
Specific function: This receptor binds the ferrichrome-iron ligand. It interacts with the tonB protein, which is responsible for energy coupling of the ferrichrome-promoted iron transport system. Acts as a receptor for bacteriophage T5 as well as T1, phi80 and colicin M. Bi
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=139, Percent_Identity=31.6546762589928, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1790405, Length=291, Percent_Identity=22.3367697594502, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83943; Mature: 83812
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNHRIMRAGLMTGAACVACCGSAHGQTMEAAPLQDQRAEAAQLGEIVVEARRTRENLQT CCCCEEEEHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC TPVAVTALTGELLAKLNVRDVVATAQFTPNLSIGAQPASITAASVYIRGIGNASPSAVSE CCEEEEEEHHHHHHHCCHHHEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC QGVGIYLDGVYIARSAGAIFDLVDLERIEVLRGPQGTLFGRNSVGGAIQLVSRKPAQSPG CCCEEEEECEEEEECCCCEEEHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCCCC AEAKFGYGTFEDWFARVRLDTGPLGNTPLRASVSYMHRQRNGYFDNTLAKSSRDPGALNS CCCCCCCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCC EAVTAAVQGDFGDLTANYAFDYNTREGVPAFFQVVAASDDVKNYFGQSESFGGAPFQIGP CCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHEECCCCHHHHHCCCCCCCCCCCEEECC VGLRQGQQLPATDLSERLTFSVKARVYGHSLTLAWQAAPHLTVKSITAYRSYRQDGANGL CCCCCCCCCCCCCHHHHEEEEEEEEEEECEEEEEEECCCCEEHHHHHHHHHHHHCCCCCC SGNGNMLGFTLSPVLFVDGSVVPEGISPVNLYDGYTTQRQHQFSQELQIFGEAGPIKYVA CCCCCEEEEEECEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHEECCCCCEEEEE GAFYFDETSSEANYQTLSYVLPGGEAAVNLFPLQAFNGKARSHAVFGQVSFSPGNGDFEL EEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEE TGGLRYTHDRKWLTLAGDVQPNLDGSASYDNVSWLASASYRLRPGVMGYIRVSSGFRAGG ECCEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEECCCEEEEEEECCCCCCCC INPSASEINVFAPEKIVSYEAGVKAEWFDRRLRTNLAVFHVDYRNLQISQFLAGTGGATS CCCCCCEEEEECCHHHEECCCCCCHHHHHHHHHCCEEEEEEECCCEEEEHHHCCCCCCHH AIVNAGKVAYRGIEAELTALPAPGLTFDGSLGYTAPKYKTYLYVDPATDEVVNVASEARM HHHCCCHHEEECCCEEEEECCCCCCEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH SQAARFNAHAGAQYDHEVGIGRLSLRADYSYRSTVYWFTLDRLNTFNRDIRSRPDHNLRA HHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECHHHHHHHHHHCCCCCCCEE RIALDDIALGTARLGLGLWGDNLTDQRNIDFGIDFGSLGYGSASFKKSRTVGLDARITY EEEEEHHEECHHHHEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCEEEECC >Mature Secondary Structure TNHRIMRAGLMTGAACVACCGSAHGQTMEAAPLQDQRAEAAQLGEIVVEARRTRENLQT CCCEEEEHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCC TPVAVTALTGELLAKLNVRDVVATAQFTPNLSIGAQPASITAASVYIRGIGNASPSAVSE CCEEEEEEHHHHHHHCCHHHEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC QGVGIYLDGVYIARSAGAIFDLVDLERIEVLRGPQGTLFGRNSVGGAIQLVSRKPAQSPG CCCEEEEECEEEEECCCCEEEHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCCCC AEAKFGYGTFEDWFARVRLDTGPLGNTPLRASVSYMHRQRNGYFDNTLAKSSRDPGALNS CCCCCCCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCC EAVTAAVQGDFGDLTANYAFDYNTREGVPAFFQVVAASDDVKNYFGQSESFGGAPFQIGP CCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHEECCCCHHHHHCCCCCCCCCCCEEECC VGLRQGQQLPATDLSERLTFSVKARVYGHSLTLAWQAAPHLTVKSITAYRSYRQDGANGL CCCCCCCCCCCCCHHHHEEEEEEEEEEECEEEEEEECCCCEEHHHHHHHHHHHHCCCCCC SGNGNMLGFTLSPVLFVDGSVVPEGISPVNLYDGYTTQRQHQFSQELQIFGEAGPIKYVA CCCCCEEEEEECEEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHEECCCCCEEEEE GAFYFDETSSEANYQTLSYVLPGGEAAVNLFPLQAFNGKARSHAVFGQVSFSPGNGDFEL EEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEE TGGLRYTHDRKWLTLAGDVQPNLDGSASYDNVSWLASASYRLRPGVMGYIRVSSGFRAGG ECCEEEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEECCCEEEEEEECCCCCCCC INPSASEINVFAPEKIVSYEAGVKAEWFDRRLRTNLAVFHVDYRNLQISQFLAGTGGATS CCCCCCEEEEECCHHHEECCCCCCHHHHHHHHHCCEEEEEEECCCEEEEHHHCCCCCCHH AIVNAGKVAYRGIEAELTALPAPGLTFDGSLGYTAPKYKTYLYVDPATDEVVNVASEARM HHHCCCHHEEECCCEEEEECCCCCCEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH SQAARFNAHAGAQYDHEVGIGRLSLRADYSYRSTVYWFTLDRLNTFNRDIRSRPDHNLRA HHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECHHHHHHHHHHCCCCCCCEE RIALDDIALGTARLGLGLWGDNLTDQRNIDFGIDFGSLGYGSASFKKSRTVGLDARITY EEEEEHHEECHHHHEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3079747; 8202364; 9278503; 2823072; 7515827; 8617231; 9856937; 9865695; 10850805 [H]