Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is yhiI [C]
Identifier: 87199057
GI number: 87199057
Start: 1073448
End: 1074422
Strand: Direct
Name: yhiI [C]
Synonym: Saro_1035
Alternate gene names: 87199057
Gene position: 1073448-1074422 (Clockwise)
Preceding gene: 87199056
Following gene: 87199058
Centisome position: 30.14
GC content: 70.46
Gene sequence:
>975_bases ATGAAGACGCCGCCGAAGCCGTTGATCGCACTGGGTGCACTCGCGCTCGCCGCGACGGGATACATGGTGTTTTCCCCATC GGCCGAGGCGGACCGCTGGTTGGGCTATGTCGAAGGCGAGCCGCTGATGATCGCGGCGCCGGTTGCGGGGACGCTTGCGG CCCGTCCTGCCATGCGCGGGCAGGAGGTGCTGCCCGGAGCCCCGCTGTTCACGCTTGACCCGACAACGACCGATGCCCAG AGCGCGCAATTGGCGGCCGAGGTCGCCGCTGCGAGGGCCCAGGCCGCCGACCTTGCGCAAGGGCGCAATCGTGCGCCCGA ACAGGCAGCGGCAAGCGCGGCCCTGGCATCGGCGCGCGCCCAGGCGGTGCGGGCCGGAGCGGATTTCGAGAGGATTTCGG CCCTGGCGGGGAAAGGCTTTGCCAGCCGCACCCAGCTTGATGCCGCGCGCGCGGCGCGCGATTCGGCCAATGCGGCGGCC AGGCAGGCGGAAGCGGTGCTTGCCAGCGGTGGACTTTCGGCAGGGCGTCCTGAACAGCAGGCCGCCGCGCAGGCGGGCGT TGGCGCGGCCGAGGCAGCCTTGCGCGCACAGACCCGCCGGCGACAGGAAATCGCGCCCGTTGCGACGGTGAAGGGCGTTG TAGAGCAAACCTTCTACGATCCGGGCGAGTGGGTGCTGGCGAACCAGCCAGTGCTTGCGGTGCTGCCCGACGACCAGCGC AAGCTGCGGTTCTTCGTGCCGCAAGGTCGCGTGGCGGCGCTCAAGGTGGGAGCCACGGTGCGCTTTACCTGCGACGGGTG CGGAGAGGGCGAGCGGACGGCGAAGGTCAGTTACATTTCGCCGCGTGCCGAGTTCACGCCGCCGGTGATCTATTCCGAGC GGGCGCGGGCCAAGCTGGTGTTCATGGTGGAAGCGGCCTTGCCGGCGGGGCAGCCCCTGCCGTTGGGTCTGCCGGTTGCG GTGGTGGCGGAGTGA
Upstream 100 bases:
>100_bases ATGTCTTCGAGCCGGTCGGTGCCGAGCCGCTGGACGTCGAATGGATGGCGGAAAATCACGCAGGGCTTATCCTGGCCGGC CTGCGCAGGGGAGACGTGGC
Downstream 100 bases:
>100_bases GCAGCGGCGAGGCATCGGCGGTACCTTCCGAAGCGTCGGGCGGTCCCCGACTGCGGGCCGAGCCGGATCTGGTCATCGAT GTGCGCGGGCTGACCAAACG
Product: secretion protein HlyD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MKTPPKPLIALGALALAATGYMVFSPSAEADRWLGYVEGEPLMIAAPVAGTLAARPAMRGQEVLPGAPLFTLDPTTTDAQ SAQLAAEVAAARAQAADLAQGRNRAPEQAAASAALASARAQAVRAGADFERISALAGKGFASRTQLDAARAARDSANAAA RQAEAVLASGGLSAGRPEQQAAAQAGVGAAEAALRAQTRRRQEIAPVATVKGVVEQTFYDPGEWVLANQPVLAVLPDDQR KLRFFVPQGRVAALKVGATVRFTCDGCGEGERTAKVSYISPRAEFTPPVIYSERARAKLVFMVEAALPAGQPLPLGLPVA VVAE
Sequences:
>Translated_324_residues MKTPPKPLIALGALALAATGYMVFSPSAEADRWLGYVEGEPLMIAAPVAGTLAARPAMRGQEVLPGAPLFTLDPTTTDAQ SAQLAAEVAAARAQAADLAQGRNRAPEQAAASAALASARAQAVRAGADFERISALAGKGFASRTQLDAARAARDSANAAA RQAEAVLASGGLSAGRPEQQAAAQAGVGAAEAALRAQTRRRQEIAPVATVKGVVEQTFYDPGEWVLANQPVLAVLPDDQR KLRFFVPQGRVAALKVGATVRFTCDGCGEGERTAKVSYISPRAEFTPPVIYSERARAKLVFMVEAALPAGQPLPLGLPVA VVAE >Mature_324_residues MKTPPKPLIALGALALAATGYMVFSPSAEADRWLGYVEGEPLMIAAPVAGTLAARPAMRGQEVLPGAPLFTLDPTTTDAQ SAQLAAEVAAARAQAADLAQGRNRAPEQAAASAALASARAQAVRAGADFERISALAGKGFASRTQLDAARAARDSANAAA RQAEAVLASGGLSAGRPEQQAAAQAGVGAAEAALRAQTRRRQEIAPVATVKGVVEQTFYDPGEWVLANQPVLAVLPDDQR KLRFFVPQGRVAALKVGATVRFTCDGCGEGERTAKVSYISPRAEFTPPVIYSERARAKLVFMVEAALPAGQPLPLGLPVA VVAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 - InterPro: IPR022936 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 33426; Mature: 33426
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTPPKPLIALGALALAATGYMVFSPSAEADRWLGYVEGEPLMIAAPVAGTLAARPAMRG CCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHEEEECCCCEEEECCCCHHHHHCCCCCC QEVLPGAPLFTLDPTTTDAQSAQLAAEVAAARAQAADLAQGRNRAPEQAAASAALASARA CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QAVRAGADFERISALAGKGFASRTQLDAARAARDSANAAARQAEAVLASGGLSAGRPEQQ HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AAAQAGVGAAEAALRAQTRRRQEIAPVATVKGVVEQTFYDPGEWVLANQPVLAVLPDDQR HHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCC KLRFFVPQGRVAALKVGATVRFTCDGCGEGERTAKVSYISPRAEFTPPVIYSERARAKLV EEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEECCCCCEEEE FMVEAALPAGQPLPLGLPVAVVAE EEEEECCCCCCCCCCCCCEEEEEC >Mature Secondary Structure MKTPPKPLIALGALALAATGYMVFSPSAEADRWLGYVEGEPLMIAAPVAGTLAARPAMRG CCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHEEEECCCCEEEECCCCHHHHHCCCCCC QEVLPGAPLFTLDPTTTDAQSAQLAAEVAAARAQAADLAQGRNRAPEQAAASAALASARA CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH QAVRAGADFERISALAGKGFASRTQLDAARAARDSANAAARQAEAVLASGGLSAGRPEQQ HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH AAAQAGVGAAEAALRAQTRRRQEIAPVATVKGVVEQTFYDPGEWVLANQPVLAVLPDDQR HHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCC KLRFFVPQGRVAALKVGATVRFTCDGCGEGERTAKVSYISPRAEFTPPVIYSERARAKLV EEEEECCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEECCCCCEEEE FMVEAALPAGQPLPLGLPVAVVAE EEEEECCCCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA