Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is aroH [H]
Identifier: 87199013
GI number: 87199013
Start: 1034325
End: 1035698
Strand: Direct
Name: aroH [H]
Synonym: Saro_0991
Alternate gene names: 87199013
Gene position: 1034325-1035698 (Clockwise)
Preceding gene: 87199012
Following gene: 87199021
Centisome position: 29.04
GC content: 65.43
Gene sequence:
>1374_bases GTGGCAAAGAACTGGACTGCGGATTCGTGGCGCGGGCATGAGGGGCGGCATCTGCCGACCTATCCGGACGCCGAAAAGCT GAACGAGGTCGAGACGACCCTGACGAGCTTTCCGCCGCTGGTTTTTGCCGGCGAGGCGCGCGCGCTCAAGGCCGATCTCG CGCAAGTGGCTGCGGGCAAGGGTTTCCTGCTCCAGGGCGGGGACTGCGCCGAAAGCTTCGCCGAGTTCCATCCGAACAAC ATTCGCGACACGTTCCGCGTGCTGCTGCAGATGGCGGTCGTGCTGACGTTCGCCAGCAAGCAGCCGGTGGTGAAGGTTGG CCGCATGGCCGGCCAGTTCGCCAAGCCGCGTTCGTCGCCGGTGGAAAAGATCGGTGACGTCGAACTGCCGAGCTACCTTG GCGACAATATCAACGGCATCGATTTCACCCCCGAGTCGCGGATTCCCGATCCCGAGCGCATGCTGCGCGCCTACAGCCAG GCGGCGGCGACGCTGAACCTGCTGCGCGCTTTCGCGGGTGGCGGCTATGCGAACCTGCGCCAGGTCCACCAGTGGACGCT CGACCACATCGGCAAGAGCCCCTGGGCGGCGAAGTTCAGCGAGATGGCCGACAAGATCGGCGAGTCTCTCGACTTCATGG AAGCCTGTGGCGTCGATCCCAGCACCGTCCCGCAGCTTCAGGGCACGAGCTTCTACACTAGCCACGAAGCGCTGCTGCTG CAGTACGAAGAAGCGATGACGCGCCAGGATTCGCTGACCGGCGAATGGTACGACACCAGCGCGCACATGCTCTGGATCGG CGACCGTACTCGCTTCGAAGGATCGGCCCACGTCGAATACCTGCGCGGCGTCGGCAATCCCATCGGCATGAAGTGCGGTC CTTCGCTGACGCCTGACGCCCTGCTGCGCATGCTGGATACGCTGAACCCCGGTCGCGAGGCCGGTCGCATCACGCTTATC AGCCGCTTCGGGCACGACAAGGTCGAAGCCGGCCTGCCGCCTCTGGTGCGTGCCGTAACGCGCGAGGGGCACCCGGTAGT GTGGTCGTGCGATCCGATGCACGGCAACGTGATCAAGGCCGACAATGGCTACAAGACGCGTCCGTTCGACCGCATCCTGA CCGAGGTGAAGGGCTTCTTCGCGGTGCATCGCGCCGAGGGAACCCACGCTGGTGGCATCCACATCGAGATGACCGGCCGC GACGTGACCGAGTGCACCGGCGGTGCGGTGGCGATCACCCAGGAAGGCCTGGCGGACCGTTACCACACCCATTGCGACCC GCGCCTCAACGCGGCGCAGTCGATCGAGCTCGCTTTCCTGATGGCCGAAGCGCTCAACCAGGAACGCGCGGAGCGCAAGG CCGAAGCGGCCTGA
Upstream 100 bases:
>100_bases CAGGCCAACGCCTTCGCCGCATGATTGCGGCGCGGGCAAGGCTTCCTTTGCATTTCTTGCCCGACGGCCTTATGGCCCCG CCTCTTGAAAGGAAGGAACA
Downstream 100 bases:
>100_bases TCGCCCCGCCTGCTTGAAGAATTGACGGCCCGTTGCCTTAGGCGACGGGCCGTTTTTCCGTGGCGAGCCCTGCCAGGGCG TGTTCGATGGCCAGCCGCGC
Product: 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
Products: NA
Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MAKNWTADSWRGHEGRHLPTYPDAEKLNEVETTLTSFPPLVFAGEARALKADLAQVAAGKGFLLQGGDCAESFAEFHPNN IRDTFRVLLQMAVVLTFASKQPVVKVGRMAGQFAKPRSSPVEKIGDVELPSYLGDNINGIDFTPESRIPDPERMLRAYSQ AAATLNLLRAFAGGGYANLRQVHQWTLDHIGKSPWAAKFSEMADKIGESLDFMEACGVDPSTVPQLQGTSFYTSHEALLL QYEEAMTRQDSLTGEWYDTSAHMLWIGDRTRFEGSAHVEYLRGVGNPIGMKCGPSLTPDALLRMLDTLNPGREAGRITLI SRFGHDKVEAGLPPLVRAVTREGHPVVWSCDPMHGNVIKADNGYKTRPFDRILTEVKGFFAVHRAEGTHAGGIHIEMTGR DVTECTGGAVAITQEGLADRYHTHCDPRLNAAQSIELAFLMAEALNQERAERKAEAA
Sequences:
>Translated_457_residues MAKNWTADSWRGHEGRHLPTYPDAEKLNEVETTLTSFPPLVFAGEARALKADLAQVAAGKGFLLQGGDCAESFAEFHPNN IRDTFRVLLQMAVVLTFASKQPVVKVGRMAGQFAKPRSSPVEKIGDVELPSYLGDNINGIDFTPESRIPDPERMLRAYSQ AAATLNLLRAFAGGGYANLRQVHQWTLDHIGKSPWAAKFSEMADKIGESLDFMEACGVDPSTVPQLQGTSFYTSHEALLL QYEEAMTRQDSLTGEWYDTSAHMLWIGDRTRFEGSAHVEYLRGVGNPIGMKCGPSLTPDALLRMLDTLNPGREAGRITLI SRFGHDKVEAGLPPLVRAVTREGHPVVWSCDPMHGNVIKADNGYKTRPFDRILTEVKGFFAVHRAEGTHAGGIHIEMTGR DVTECTGGAVAITQEGLADRYHTHCDPRLNAAQSIELAFLMAEALNQERAERKAEAA >Mature_456_residues AKNWTADSWRGHEGRHLPTYPDAEKLNEVETTLTSFPPLVFAGEARALKADLAQVAAGKGFLLQGGDCAESFAEFHPNNI RDTFRVLLQMAVVLTFASKQPVVKVGRMAGQFAKPRSSPVEKIGDVELPSYLGDNINGIDFTPESRIPDPERMLRAYSQA AATLNLLRAFAGGGYANLRQVHQWTLDHIGKSPWAAKFSEMADKIGESLDFMEACGVDPSTVPQLQGTSFYTSHEALLLQ YEEAMTRQDSLTGEWYDTSAHMLWIGDRTRFEGSAHVEYLRGVGNPIGMKCGPSLTPDALLRMLDTLNPGREAGRITLIS RFGHDKVEAGLPPLVRAVTREGHPVVWSCDPMHGNVIKADNGYKTRPFDRILTEVKGFFAVHRAEGTHAGGIHIEMTGRD VTECTGGAVAITQEGLADRYHTHCDPRLNAAQSIELAFLMAEALNQERAERKAEAA
Specific function: Unknown
COG id: COG3200
COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II DAHP synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002480 [H]
Pfam domain/function: PF01474 DAHP_synth_2 [H]
EC number: =2.5.1.54 [H]
Molecular weight: Translated: 50171; Mature: 50040
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKNWTADSWRGHEGRHLPTYPDAEKLNEVETTLTSFPPLVFAGEARALKADLAQVAAGK CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCC GFLLQGGDCAESFAEFHPNNIRDTFRVLLQMAVVLTFASKQPVVKVGRMAGQFAKPRSSP CEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCH VEKIGDVELPSYLGDNINGIDFTPESRIPDPERMLRAYSQAAATLNLLRAFAGGGYANLR HHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QVHQWTLDHIGKSPWAAKFSEMADKIGESLDFMEACGVDPSTVPQLQGTSFYTSHEALLL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHH QYEEAMTRQDSLTGEWYDTSAHMLWIGDRTRFEGSAHVEYLRGVGNPIGMKCGPSLTPDA HHHHHHHHHHCCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH LLRMLDTLNPGREAGRITLISRFGHDKVEAGLPPLVRAVTREGHPVVWSCDPMHGNVIKA HHHHHHHCCCCCCCCEEEEEECCCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCEEEC DNGYKTRPFDRILTEVKGFFAVHRAEGTHAGGIHIEMTGRDVTECTGGAVAITQEGLADR CCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCHHHHCCCEEEEEHHHHHHH YHTHCDPRLNAAQSIELAFLMAEALNQERAERKAEAA HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AKNWTADSWRGHEGRHLPTYPDAEKLNEVETTLTSFPPLVFAGEARALKADLAQVAAGK CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCC GFLLQGGDCAESFAEFHPNNIRDTFRVLLQMAVVLTFASKQPVVKVGRMAGQFAKPRSSP CEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCH VEKIGDVELPSYLGDNINGIDFTPESRIPDPERMLRAYSQAAATLNLLRAFAGGGYANLR HHHHCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QVHQWTLDHIGKSPWAAKFSEMADKIGESLDFMEACGVDPSTVPQLQGTSFYTSHEALLL HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHH QYEEAMTRQDSLTGEWYDTSAHMLWIGDRTRFEGSAHVEYLRGVGNPIGMKCGPSLTPDA HHHHHHHHHHCCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHH LLRMLDTLNPGREAGRITLISRFGHDKVEAGLPPLVRAVTREGHPVVWSCDPMHGNVIKA HHHHHHHCCCCCCCCEEEEEECCCCCHHHCCCHHHHHHHHCCCCEEEEECCCCCCCEEEC DNGYKTRPFDRILTEVKGFFAVHRAEGTHAGGIHIEMTGRDVTECTGGAVAITQEGLADR CCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCHHHHCCCEEEEEHHHHHHH YHTHCDPRLNAAQSIELAFLMAEALNQERAERKAEAA HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953; 8760910 [H]