Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198688
Identifier: 87198688
GI number: 87198688
Start: 700231
End: 702399
Strand: Direct
Name: 87198688
Synonym: Saro_0664
Alternate gene names: NA
Gene position: 700231-702399 (Clockwise)
Preceding gene: 87198687
Following gene: 87198689
Centisome position: 19.66
GC content: 61.92
Gene sequence:
>2169_bases ATGCCGACCGCTGAGGAATGGGCAGTGCAAGCCCAGGCCAGTGCAATTGCTGCGTCGAGTGCCGCGTCCGGGCTCGCTGC AACGCTGGCGTTGGTAGATGACCGGAAGGAAGCGGTCGTAAACATGGCCGACTCTGTAGAGTCGTCTGCCTTGCTGGCTA CAACGCAAGCCAGCACAGCGACGGCGCAAGCTGCCCTCGCAATTGGGGCTGCTACGAATTTGCAGGCGGAAGCTATTGGG GCGAGGCAGGGTGGCACAGTTGCCGACACCGGCAAGCAGGTGTTGTCGCTCGTCGGGATAGACGGCGGCACCTCCAACCT GACGGCCACGTTTGCCCGTTGGGCCCGGTTCCGCGATGCAGGCTCGGTCGACGACGAAACGACTATCAAGACTGGATCGA TCGTATCGGGCATCGCCCTGACCGCCGTTGTCCTTGCGACGGCAGCAAAGGCGCGCGGCAGGGTTTGGCGGCGGCCACTG TCGAGCGGTTCGCTGAATGCGGCACCGGGCTCCGCGCCAGACGACGTCCTCCTTCGGGATACCGGAATTGTCGCGATCGC CGACGATCTCCTGACGATGGTCGGTTTGTCGCAGATCTACCTCAACATCCCGGTCACCAAGTTTGAAGTGCTTGCCGGCT ACGCCTACGGCTTCGACTTCGAGATCTACGACGCTTCGAATACGCTGCTCACCGCTACGGCGAGATACACCACAACGGCC GCGCTCGCGCAGCGTCACGCCGGGTTCTATTATGCGACCACGGGGGCGGGCAGCTTCACGGCGCAGACGACGACGCGCCC GATCCGGATGGGCTATTCCACGCCGAGTATCACTTCCAACCTGACCGACCTCGAGAAAAAGGCCGAGCGCAAGCTGGCGG CGACGGCGAACTCGAGCAAGTTGACGGATCTCGAGCGCTTGGCGATCTCGCGCCAGGGCGCCTGGTCCGGGCCGAACAAG ATCATTCGGCCGAACTACCCCTCCTATCGGCACGGCCTGGCGCGCCTCGGGCTTACCGATGGTGCATATGGCGTCGACTA TGGTCCGCGCATTGCGCTGGCGGACATGACTGAAATGACGGCGGTTACCGGCGTGAACCTCGGGAGCTCGGGGCAAATTC GCTTCGAGAGCGGCAGTGCGAACAGCCCCAAGGGAGCGGTCTATTCCGGCCTCAAGCAGGTGGGCTCGCGCGGGATCTAC CAGCCTACCGCCAACTGGGCCCGGCTGTTCCTGACCGACTGCTACATGAACGGGCAGACTACGGTCGGCAAGCCGGTGGA CATCCAGCAGGTGGGGGACAGCGGGGTGACCAAGTTCCCCTATGTCGAACTCGAGTATTGCGACTTCCGCTATTTCTCGG CCGGCATGGGCAACCTCTACAACGGGGCGATCCGCAAGAGCCTGATCCTGCACAGCGGTGCCAACACGCTCCAGATCCAG CAAGAATATGACAACGGCTGCGCCCTTATCCTGGAACAAAACCTGTTCATGTTCGCCAGCACCATCGAAGCCGGCGCCAT TTCATCCAGCCACGGCGATGTGCTGGAAATGAACATGGCCCGCAACGCATCGTGTGTCGGCAACGTCTATTACATGCCGT CGACCGGGACGACCTACGATCCCGGCTCCTATGGCTCAACCAACTGCATCAGGCATTCTGCTCAGTCGTCGGCGCCGATC AGCAACGTCTATCACCTGGGCGAGCTGATCGTCGGCGGCAACAGCCCGGTGGGCATGAACATGCGCGGCGGGACCATCCT GAACATGCTGTTCGCCTTCAACAAGTACGGGGGCACCGAATACAGTTCGGTCAACAGCTACATCGCTATGACCGGTCCGC AGACGGGCGATACCGGCATCACGACCGATTGGTGCAACCTTGCGTTCTTCGACGAATATCGCGTCGATGGCACGCCGATG CCAATTGGCGGCGGCACTCCGGGTACGGTCAACAACGCAGTGCCAGCTACCTATTATGCGCGGCCTGCGAACGCCTACCG AACGAACGAAGAGAAATGGGGCATATTCAACTGGGATAAGGCGCGCGCGACGCCCAAGTTCATCGAGGCGCTGCAGCTTC TGGGGCTGGCGACGGGGCGGACGATCCTCGACAGCAATAACGATTTGAACGCTGAATATGCCCTCGGCGCTCTGAAGGCC ACGCTGTGA
Upstream 100 bases:
>100_bases CACGCACGCTCAGCTTCCGTCGACTTGTCTCACCACAGCGCTTGGTACTGCTGGCGGACTGACGCCGCTTGTCCGTGCCC GCATTGCATAAGGAACTAGT
Downstream 100 bases:
>100_bases ACTCAGGTGACACCGGCAACGCCGCACAGGTCCGCCTGATCGCGGAGCAGGTAGCCGAGGCTGCCGTCATCAAGTTCGCA GCGGAGCATCCGGAATTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 722; Mature: 721
Protein sequence:
>722_residues MPTAEEWAVQAQASAIAASSAASGLAATLALVDDRKEAVVNMADSVESSALLATTQASTATAQAALAIGAATNLQAEAIG ARQGGTVADTGKQVLSLVGIDGGTSNLTATFARWARFRDAGSVDDETTIKTGSIVSGIALTAVVLATAAKARGRVWRRPL SSGSLNAAPGSAPDDVLLRDTGIVAIADDLLTMVGLSQIYLNIPVTKFEVLAGYAYGFDFEIYDASNTLLTATARYTTTA ALAQRHAGFYYATTGAGSFTAQTTTRPIRMGYSTPSITSNLTDLEKKAERKLAATANSSKLTDLERLAISRQGAWSGPNK IIRPNYPSYRHGLARLGLTDGAYGVDYGPRIALADMTEMTAVTGVNLGSSGQIRFESGSANSPKGAVYSGLKQVGSRGIY QPTANWARLFLTDCYMNGQTTVGKPVDIQQVGDSGVTKFPYVELEYCDFRYFSAGMGNLYNGAIRKSLILHSGANTLQIQ QEYDNGCALILEQNLFMFASTIEAGAISSSHGDVLEMNMARNASCVGNVYYMPSTGTTYDPGSYGSTNCIRHSAQSSAPI SNVYHLGELIVGGNSPVGMNMRGGTILNMLFAFNKYGGTEYSSVNSYIAMTGPQTGDTGITTDWCNLAFFDEYRVDGTPM PIGGGTPGTVNNAVPATYYARPANAYRTNEEKWGIFNWDKARATPKFIEALQLLGLATGRTILDSNNDLNAEYALGALKA TL
Sequences:
>Translated_722_residues MPTAEEWAVQAQASAIAASSAASGLAATLALVDDRKEAVVNMADSVESSALLATTQASTATAQAALAIGAATNLQAEAIG ARQGGTVADTGKQVLSLVGIDGGTSNLTATFARWARFRDAGSVDDETTIKTGSIVSGIALTAVVLATAAKARGRVWRRPL SSGSLNAAPGSAPDDVLLRDTGIVAIADDLLTMVGLSQIYLNIPVTKFEVLAGYAYGFDFEIYDASNTLLTATARYTTTA ALAQRHAGFYYATTGAGSFTAQTTTRPIRMGYSTPSITSNLTDLEKKAERKLAATANSSKLTDLERLAISRQGAWSGPNK IIRPNYPSYRHGLARLGLTDGAYGVDYGPRIALADMTEMTAVTGVNLGSSGQIRFESGSANSPKGAVYSGLKQVGSRGIY QPTANWARLFLTDCYMNGQTTVGKPVDIQQVGDSGVTKFPYVELEYCDFRYFSAGMGNLYNGAIRKSLILHSGANTLQIQ QEYDNGCALILEQNLFMFASTIEAGAISSSHGDVLEMNMARNASCVGNVYYMPSTGTTYDPGSYGSTNCIRHSAQSSAPI SNVYHLGELIVGGNSPVGMNMRGGTILNMLFAFNKYGGTEYSSVNSYIAMTGPQTGDTGITTDWCNLAFFDEYRVDGTPM PIGGGTPGTVNNAVPATYYARPANAYRTNEEKWGIFNWDKARATPKFIEALQLLGLATGRTILDSNNDLNAEYALGALKA TL >Mature_721_residues PTAEEWAVQAQASAIAASSAASGLAATLALVDDRKEAVVNMADSVESSALLATTQASTATAQAALAIGAATNLQAEAIGA RQGGTVADTGKQVLSLVGIDGGTSNLTATFARWARFRDAGSVDDETTIKTGSIVSGIALTAVVLATAAKARGRVWRRPLS SGSLNAAPGSAPDDVLLRDTGIVAIADDLLTMVGLSQIYLNIPVTKFEVLAGYAYGFDFEIYDASNTLLTATARYTTTAA LAQRHAGFYYATTGAGSFTAQTTTRPIRMGYSTPSITSNLTDLEKKAERKLAATANSSKLTDLERLAISRQGAWSGPNKI IRPNYPSYRHGLARLGLTDGAYGVDYGPRIALADMTEMTAVTGVNLGSSGQIRFESGSANSPKGAVYSGLKQVGSRGIYQ PTANWARLFLTDCYMNGQTTVGKPVDIQQVGDSGVTKFPYVELEYCDFRYFSAGMGNLYNGAIRKSLILHSGANTLQIQQ EYDNGCALILEQNLFMFASTIEAGAISSSHGDVLEMNMARNASCVGNVYYMPSTGTTYDPGSYGSTNCIRHSAQSSAPIS NVYHLGELIVGGNSPVGMNMRGGTILNMLFAFNKYGGTEYSSVNSYIAMTGPQTGDTGITTDWCNLAFFDEYRVDGTPMP IGGGTPGTVNNAVPATYYARPANAYRTNEEKWGIFNWDKARATPKFIEALQLLGLATGRTILDSNNDLNAEYALGALKAT L
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76256; Mature: 76125
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTAEEWAVQAQASAIAASSAASGLAATLALVDDRKEAVVNMADSVESSALLATTQASTA CCCHHHHHHHHHHHHHHHHHHHCCHHEEEEHHCCHHHHHHHHHHHCCCCEEEEECCCCHH TAQAALAIGAATNLQAEAIGARQGGTVADTGKQVLSLVGIDGGTSNLTATFARWARFRDA HHHHHEEECCCCCCCHHEECCCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCC GSVDDETTIKTGSIVSGIALTAVVLATAAKARGRVWRRPLSSGSLNAAPGSAPDDVLLRD CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEC TGIVAIADDLLTMVGLSQIYLNIPVTKFEVLAGYAYGFDFEIYDASNTLLTATARYTTTA CCEEEEHHHHHHHHCHHEEEEECCCHHEEEHEEEEECCEEEEEECCCEEEEEEEHHHHHH ALAQRHAGFYYATTGAGSFTAQTTTRPIRMGYSTPSITSNLTDLEKKAERKLAATANSSK HHHHHCCCEEEEECCCCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCH LTDLERLAISRQGAWSGPNKIIRPNYPSYRHGLARLGLTDGAYGVDYGPRIALADMTEMT HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHH AVTGVNLGSSGQIRFESGSANSPKGAVYSGLKQVGSRGIYQPTANWARLFLTDCYMNGQT HHEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHEEEEHHEECCCC TVGKPVDIQQVGDSGVTKFPYVELEYCDFRYFSAGMGNLYNGAIRKSLILHSGANTLQIQ CCCCCCCHHHCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHEEECCCCEEEEE QEYDNGCALILEQNLFMFASTIEAGAISSSHGDVLEMNMARNASCVGNVYYMPSTGTTYD EECCCCEEEEEECCEEEEEHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCC PGSYGSTNCIRHSAQSSAPISNVYHLGELIVGGNSPVGMNMRGGTILNMLFAFNKYGGTE CCCCCCCHHHHHCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC YSSVNSYIAMTGPQTGDTGITTDWCNLAFFDEYRVDGTPMPIGGGTPGTVNNAVPATYYA CCCCCCEEEEECCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE RPANAYRTNEEKWGIFNWDKARATPKFIEALQLLGLATGRTILDSNNDLNAEYALGALKA CCCCCCCCCCCCCCEECCHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHH TL CC >Mature Secondary Structure PTAEEWAVQAQASAIAASSAASGLAATLALVDDRKEAVVNMADSVESSALLATTQASTA CCHHHHHHHHHHHHHHHHHHHCCHHEEEEHHCCHHHHHHHHHHHCCCCEEEEECCCCHH TAQAALAIGAATNLQAEAIGARQGGTVADTGKQVLSLVGIDGGTSNLTATFARWARFRDA HHHHHEEECCCCCCCHHEECCCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCC GSVDDETTIKTGSIVSGIALTAVVLATAAKARGRVWRRPLSSGSLNAAPGSAPDDVLLRD CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEC TGIVAIADDLLTMVGLSQIYLNIPVTKFEVLAGYAYGFDFEIYDASNTLLTATARYTTTA CCEEEEHHHHHHHHCHHEEEEECCCHHEEEHEEEEECCEEEEEECCCEEEEEEEHHHHHH ALAQRHAGFYYATTGAGSFTAQTTTRPIRMGYSTPSITSNLTDLEKKAERKLAATANSSK HHHHHCCCEEEEECCCCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCH LTDLERLAISRQGAWSGPNKIIRPNYPSYRHGLARLGLTDGAYGVDYGPRIALADMTEMT HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHH AVTGVNLGSSGQIRFESGSANSPKGAVYSGLKQVGSRGIYQPTANWARLFLTDCYMNGQT HHEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHEEEEHHEECCCC TVGKPVDIQQVGDSGVTKFPYVELEYCDFRYFSAGMGNLYNGAIRKSLILHSGANTLQIQ CCCCCCCHHHCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHEEECCCCEEEEE QEYDNGCALILEQNLFMFASTIEAGAISSSHGDVLEMNMARNASCVGNVYYMPSTGTTYD EECCCCEEEEEECCEEEEEHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCC PGSYGSTNCIRHSAQSSAPISNVYHLGELIVGGNSPVGMNMRGGTILNMLFAFNKYGGTE CCCCCCCHHHHHCCCCCCCHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC YSSVNSYIAMTGPQTGDTGITTDWCNLAFFDEYRVDGTPMPIGGGTPGTVNNAVPATYYA CCCCCCEEEEECCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE RPANAYRTNEEKWGIFNWDKARATPKFIEALQLLGLATGRTILDSNNDLNAEYALGALKA CCCCCCCCCCCCCCEECCHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHH TL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA