Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198661
Identifier: 87198661
GI number: 87198661
Start: 677034
End: 677600
Strand: Direct
Name: 87198661
Synonym: Saro_0637
Alternate gene names: NA
Gene position: 677034-677600 (Clockwise)
Preceding gene: 87198660
Following gene: 87198662
Centisome position: 19.01
GC content: 68.08
Gene sequence:
>567_bases GTGAGCCATGTTTCCGGGCGGAAGGTCGCGCCGGCCCACTCGACCCTCTATGTCCCGAAGGACCAGCTCGAGGCGTGGTT CCTGAAGGCGAGCGAAGGCGCGAAGCGCGTCTACGCGCGCGGCCCGGGTCTGGATCAGAAGGAAGCGGTCTGCATCCTGG TGCGCGACTGGGCGAGCACTGGCGAAGTCGACCTGGTCCAGATGCGCGACCAGGAGACGCGCGAGCTGCTGTACTACGTG CGGCGCAAGCGGCCCGTGGTGCGCGAGGCGGGAGCCGATCGCCGCCGGGTGCAGGTTGATGACCAGTTCCGCGAGACTCC GGAAGGCCGCATTTTCCTGATGCTCGTGCGCGCGGCCAACCTTGGACGGCCCTGTCCGAGCAATGCGGAACTGGCCGAGT TCGCTGGCCTCGAGACGGCCGAGCAAGCCCGGTACCTGCTGCGCGAAAAGCTGGTCAAGCCGGGGCTGGTCGAACTGCAC CACGTGGGTGCCGGCAATGCGCAGCGGCGCGCGAAGATCGTGGAAACGGGCCGGTGGACGGCGGACATCAAGGAGAACGG GCGGTGA
Upstream 100 bases:
>100_bases ACCCGACCGAAGCGGAGGGCATCCTTCGGCAACTCGATCAGCACGACCGTGCAAGCGCCCATTACCGCGCAGTGCTCATG AAAATCAGGGAGAAAGGCCA
Downstream 100 bases:
>100_bases GCAATGATAGGAAGGCGCTTGCCGCTGCAGTGCGCGCGCGGGTTTCAGGTTTGCTGGGCGACGGAGTCCATAGCGGCGCG GTGGTTTCCACCGCAGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSHVSGRKVAPAHSTLYVPKDQLEAWFLKASEGAKRVYARGPGLDQKEAVCILVRDWASTGEVDLVQMRDQETRELLYYV RRKRPVVREAGADRRRVQVDDQFRETPEGRIFLMLVRAANLGRPCPSNAELAEFAGLETAEQARYLLREKLVKPGLVELH HVGAGNAQRRAKIVETGRWTADIKENGR
Sequences:
>Translated_188_residues MSHVSGRKVAPAHSTLYVPKDQLEAWFLKASEGAKRVYARGPGLDQKEAVCILVRDWASTGEVDLVQMRDQETRELLYYV RRKRPVVREAGADRRRVQVDDQFRETPEGRIFLMLVRAANLGRPCPSNAELAEFAGLETAEQARYLLREKLVKPGLVELH HVGAGNAQRRAKIVETGRWTADIKENGR >Mature_187_residues SHVSGRKVAPAHSTLYVPKDQLEAWFLKASEGAKRVYARGPGLDQKEAVCILVRDWASTGEVDLVQMRDQETRELLYYVR RKRPVVREAGADRRRVQVDDQFRETPEGRIFLMLVRAANLGRPCPSNAELAEFAGLETAEQARYLLREKLVKPGLVELHH VGAGNAQRRAKIVETGRWTADIKENGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21289; Mature: 21157
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHVSGRKVAPAHSTLYVPKDQLEAWFLKASEGAKRVYARGPGLDQKEAVCILVRDWAST CCCCCCCEECCCCCEEECCHHHHHHHEEECCCCCCEEEECCCCCCCCCEEEEEEECCCCC GEVDLVQMRDQETRELLYYVRRKRPVVREAGADRRRVQVDDQFRETPEGRIFLMLVRAAN CCEEEEECCCHHHHHHHHHHHHCCCHHHHCCCCCCEEEECHHHHCCCCCEEEEEEEEHHC LGRPCPSNAELAEFAGLETAEQARYLLREKLVKPGLVELHHVGAGNAQRRAKIVETGRWT CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEE ADIKENGR ECCCCCCC >Mature Secondary Structure SHVSGRKVAPAHSTLYVPKDQLEAWFLKASEGAKRVYARGPGLDQKEAVCILVRDWAST CCCCCCEECCCCCEEECCHHHHHHHEEECCCCCCEEEECCCCCCCCCEEEEEEECCCCC GEVDLVQMRDQETRELLYYVRRKRPVVREAGADRRRVQVDDQFRETPEGRIFLMLVRAAN CCEEEEECCCHHHHHHHHHHHHCCCHHHHCCCCCCEEEECHHHHCCCCCEEEEEEEEHHC LGRPCPSNAELAEFAGLETAEQARYLLREKLVKPGLVELHHVGAGNAQRRAKIVETGRWT CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEE ADIKENGR ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA