Click here to switch to the map view.

The map label for this gene is sigW [H]

Identifier: 87198570

GI number: 87198570

Start: 598289

End: 598936

Strand: Direct

Name: sigW [H]

Synonym: Saro_0546

Alternate gene names: 87198570

Gene position: 598289-598936 (Clockwise)

Preceding gene: 87198568

Following gene: 87198571

Centisome position: 16.8

GC content: 65.43

Gene sequence:

>648_bases
TTGACGTTCTACGGCGACGTACGATCGGAGGCGGTGGCAGGCGATGACGTCCTGCTGTGCCCGGCCGACCCCATTCACCG
CGAGGCGCTGCACGACGCCGCGCTGATGAGCGAAGTCGCGCGCGGCTCGGTCGAAGCGTTCTCCGTACTTGTCGACCGCC
ATTCTCCTGCGCTCTACCGCGTTGCCATGCGCATGCTCTCGGACGGAGCGGAAGCCGAGGACGTGGTGCAGGACTGTTTC
ACCCGACTCTGGCAGAATGCACCGCGCTGGAAGCCCAGCGGGGCAGGTCTGGTGGGATGGCTTCACCGCGTCACCATGAA
CCTGTGCTTCGATCGCAAGCGCCGCTTCCGGGTGGTGACGGTCGAGACGCTGCCTGACCCTGCCGATGATTCCCCGCTGC
CCGACCGGCGCATAGAAGCCGACCAGGCCGCGCGCGGTGTCGCCGATGCCCTGGCCGACCTGCCGGAGCGTTATCGCGCT
GCCCTCGTGCTCTGTTATTACGAGGGATTCACGAATGCCCTTGCGGCAGAGGTCCTTGATCTCAATATCAAGGCCATGGA
ATCGCTTCTGTTCAGGGCGCGTCGGCAGATGCGCGGGCTTCTCGAGGCACGCGACATATCGACCGGCGATCTCGAGGCGC
AGGCCTGA

Upstream 100 bases:

>100_bases
CGGCGGAAACCAGGACGGCTCCGTAAATCTACGGTTCACCTTGGACTCGGCAGTCAGTTCCCGCTCCTCGGCGGAGCAAG
GTGCGAAACGGCAGGTTTCC

Downstream 100 bases:

>100_bases
TGGCCCGCGCTGTCCCCCGCTCGCCCGCCCTCCAGGAAGCCGCGCTCGACGCAGCCTTGGCACGCGCCGCCACCCCGTCC
ATGCCCGCCGGCCTTGCCGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTFYGDVRSEAVAGDDVLLCPADPIHREALHDAALMSEVARGSVEAFSVLVDRHSPALYRVAMRMLSDGAEAEDVVQDCF
TRLWQNAPRWKPSGAGLVGWLHRVTMNLCFDRKRRFRVVTVETLPDPADDSPLPDRRIEADQAARGVADALADLPERYRA
ALVLCYYEGFTNALAAEVLDLNIKAMESLLFRARRQMRGLLEARDISTGDLEAQA

Sequences:

>Translated_215_residues
MTFYGDVRSEAVAGDDVLLCPADPIHREALHDAALMSEVARGSVEAFSVLVDRHSPALYRVAMRMLSDGAEAEDVVQDCF
TRLWQNAPRWKPSGAGLVGWLHRVTMNLCFDRKRRFRVVTVETLPDPADDSPLPDRRIEADQAARGVADALADLPERYRA
ALVLCYYEGFTNALAAEVLDLNIKAMESLLFRARRQMRGLLEARDISTGDLEAQA
>Mature_214_residues
TFYGDVRSEAVAGDDVLLCPADPIHREALHDAALMSEVARGSVEAFSVLVDRHSPALYRVAMRMLSDGAEAEDVVQDCFT
RLWQNAPRWKPSGAGLVGWLHRVTMNLCFDRKRRFRVVTVETLPDPADDSPLPDRRIEADQAARGVADALADLPERYRAA
LVLCYYEGFTNALAAEVLDLNIKAMESLLFRARRQMRGLLEARDISTGDLEAQA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23932; Mature: 23801

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFYGDVRSEAVAGDDVLLCPADPIHREALHDAALMSEVARGSVEAFSVLVDRHSPALYR
CCCCCCCHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHH
VAMRMLSDGAEAEDVVQDCFTRLWQNAPRWKPSGAGLVGWLHRVTMNLCFDRKRRFRVVT
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
VETLPDPADDSPLPDRRIEADQAARGVADALADLPERYRAALVLCYYEGFTNALAAEVLD
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNIKAMESLLFRARRQMRGLLEARDISTGDLEAQA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TFYGDVRSEAVAGDDVLLCPADPIHREALHDAALMSEVARGSVEAFSVLVDRHSPALYR
CCCCCCHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHH
VAMRMLSDGAEAEDVVQDCFTRLWQNAPRWKPSGAGLVGWLHRVTMNLCFDRKRRFRVVT
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
VETLPDPADDSPLPDRRIEADQAARGVADALADLPERYRAALVLCYYEGFTNALAAEVLD
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNIKAMESLLFRARRQMRGLLEARDISTGDLEAQA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]