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The map label for this gene is exbD [H]

Identifier: 87198416

GI number: 87198416

Start: 427850

End: 428329

Strand: Direct

Name: exbD [H]

Synonym: Saro_0391

Alternate gene names: 87198416

Gene position: 427850-428329 (Clockwise)

Preceding gene: 87198415

Following gene: 87198417

Centisome position: 12.01

GC content: 66.67

Gene sequence:

>480_bases
ATGGCGGTCAACCTTTCGGGCGGTTCGGGGCGCGGGCGCCGGGGCTTCGGCGGCCGCAGCCCCATGTCCGAAATCAACGT
GACGCCGCTGGTCGATGTCATGCTCGTGCTGCTGATCATCTTCATGGTGACGGCGCCGCTGCTCAGGGCCGGAGTCCCGG
TGAACCTGCCCGAGAGCAAGGCCAAGGCACTTGGCGAAGACAAGGATCAGGTAACGCTGAGCCTCTCGCGCGACGGGCGC
GTCTATCTCGACGATGTCGAGGTTCCCCCCGGAGCATTGCCCGATCAGCTTGCCGGCCTGCCGCGCTCCGCAGGCGGAGA
GCCCCCGCTGGTAACCCTGCGGGCTGACCGGTCCCTCGACTACGGGCGCATCATGGAAGTCATGGGCGAACTCAACCAGG
CAGGATTCAACTCGATTTCGCTGATCACCCTCGCGGCCGGCGAGGCAGGTTCGCAGGATCGGGAGAAGCCGGCGCCGTGA

Upstream 100 bases:

>100_bases
ACAATCGGTTTGGTCACAGCTTGAACCGCTTTGAAGCGCGGCTGGTACGCTTCGCCCGATACCTGCGCGGCAATCTCAGC
CGCGAACTGGACGCGCTCTG

Downstream 100 bases:

>100_bases
ACGCAACGGTCGGATCCCTGCTTCCGACTTCGCGCGATGAGCGCGTCGGGCTGGTCCTGGCGGCAGGGCTCCATGCCTTG
CTGCTTGCCGCGCTGGCCTG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MAVNLSGGSGRGRRGFGGRSPMSEINVTPLVDVMLVLLIIFMVTAPLLRAGVPVNLPESKAKALGEDKDQVTLSLSRDGR
VYLDDVEVPPGALPDQLAGLPRSAGGEPPLVTLRADRSLDYGRIMEVMGELNQAGFNSISLITLAAGEAGSQDREKPAP

Sequences:

>Translated_159_residues
MAVNLSGGSGRGRRGFGGRSPMSEINVTPLVDVMLVLLIIFMVTAPLLRAGVPVNLPESKAKALGEDKDQVTLSLSRDGR
VYLDDVEVPPGALPDQLAGLPRSAGGEPPLVTLRADRSLDYGRIMEVMGELNQAGFNSISLITLAAGEAGSQDREKPAP
>Mature_158_residues
AVNLSGGSGRGRRGFGGRSPMSEINVTPLVDVMLVLLIIFMVTAPLLRAGVPVNLPESKAKALGEDKDQVTLSLSRDGRV
YLDDVEVPPGALPDQLAGLPRSAGGEPPLVTLRADRSLDYGRIMEVMGELNQAGFNSISLITLAAGEAGSQDREKPAP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=121, Percent_Identity=40.495867768595, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16691; Mature: 16560

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVNLSGGSGRGRRGFGGRSPMSEINVTPLVDVMLVLLIIFMVTAPLLRAGVPVNLPESK
CEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AKALGEDKDQVTLSLSRDGRVYLDDVEVPPGALPDQLAGLPRSAGGEPPLVTLRADRSLD
HHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC
YGRIMEVMGELNQAGFNSISLITLAAGEAGSQDREKPAP
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
AVNLSGGSGRGRRGFGGRSPMSEINVTPLVDVMLVLLIIFMVTAPLLRAGVPVNLPESK
EEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AKALGEDKDQVTLSLSRDGRVYLDDVEVPPGALPDQLAGLPRSAGGEPPLVTLRADRSLD
HHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC
YGRIMEVMGELNQAGFNSISLITLAAGEAGSQDREKPAP
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]