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The map label for this gene is yqhH [H]

Identifier: 87198378

GI number: 87198378

Start: 385089

End: 387890

Strand: Direct

Name: yqhH [H]

Synonym: Saro_0353

Alternate gene names: 87198378

Gene position: 385089-387890 (Clockwise)

Preceding gene: 87198377

Following gene: 87198379

Centisome position: 10.81

GC content: 64.35

Gene sequence:

>2802_bases
ATGACATCCGTTTCCGTTGCTCCTGGCCAGCTCCAGATCGGAGACCTGGTGCATGCCCGGGGACGCGAGTGGATCGTGCT
GGCAAAGCCGTCGGATGGCCTCTTGCGCGTTCGGCCTTTGTCGGGCTCTGAGGACGATGCGATCCTCATTGCCCCCAAGC
TGGAACGCCAGCCTGTGCATGAGGCGAGCTTTGCTCTTCCCAACTCCGATCAGCTGGACACGCAGGACGCCGCACGGCTG
CTGACCGATGCTCTGCGGCTCTCCTTGCGCCGGGGTGCGGGGCCGTTCCGAAGCGCAGCCCATCTCGGCGTCGAGCCGCG
GGCCTATCAGCTTGTGCCGCTGCTCATGGCCTTGCGGCTCGAGGTCAAGCGGATGCTGATCGCTGACGATGTCGGCATCG
GGAAAACGATCGAAGCCGGCATGATCCTTCGCGAGATGCTGGACCGGGGGGAGATTGACAGCTTTACGGTCCTGTGCCCG
CCGCATCTGGTGGATCAATGGGTCGGCGAACTTGCCCAGAAGTTCGACATTGATTCCGTGGCCGTCACATCGGCCCGTGC
GCGTTCGCTGGAGCAGGGTATCGCCCTTGGCGACACAATCTTCGGCGTGCATCCGTTCACGGTCGTGAGCCTCGACTACA
TCAAGGCCGATAGCCGCCGCGAGGGCTTTGCGCAGGCTTGCCCGAAGTTCGTGATCGTTGACGAGGCGCATAGCTGCGTC
GGCGGCAGCGAGAAAGGCACCCAGCAGCGCTTCTCCTTGTTGCAGCGCCTGGTCGAGGATGAGGCCCGGCACATGCTCCT
GCTGACCGCCACACCCCACAGCGGCAATCAGGATGCCTATGCTCGCCTGTTGAGCCTGCTCCATCCCGACCTGTTGCGCG
CGCCGGATACGCTCGATGCCAACGCCCTCGAACGCTATCGGCGGCGGCTTGCTCAGCACTTCGTTCAGCGCCGCCGCCCC
GACATTGCTGATCAGTGGGGCGAGGGTCGATCGTTCGCCGAGCCCATGAAGGCTGACGCACCCTACAGTCTGACGGGCGA
TTTTCAGGCCTTTCAGGAAGATGTCCTCGAATATTGCCTTGGCGTGGCGACGCGGGCCGATGGTGCGCAGGCTCGCCGTC
TCGCCTTCTGGGGTACGCTCGCCCTGATGCGCTGCGTGGGTTCGTCGCCGGCTGCCGCGCTAAGTGCGCTGCGCAACCGT
CTCTCCGGCATGGCGGAAGAAGCACTGCTCGGACCCATTCTATTCGATGATGATGATGACGAGTTTGCCGACACGGATAT
CGAACCAGCGACCGCTGGTGACAGCGAGGAGATCGCTGAACTTCGCCAGCTGATTTCGAAGGCTGAGGGCCTGAACTCTC
GGTTCGCCGATGATCCCAAGTTCCGCGAGCTCGTCGCGCAGGTCAAGGACCTGACGGGCAAGAAGGAGGCCCGCCCCGTT
ATCTTCTGCCGCTTCATCGCCACTGCCGAAGCCGTGGGCGAAGCGCTGCGCAGCCGCTTTAAGTCGCACACCGTCGAGGT
GGTCACCGGTCGCCTCACGCCTGAGGAACGGCGTGAGCGGGTCGAGGCCCTCGAGGATCACCCCAATCGCATCCTCGTCG
CTACAGACTGCCTGTCGGAGGGGATCAACCTCCAATCGCTGTTCAATGCCGTGGTCCACTATGACCTCAACTGGAACCCC
ACCCGCCACCAGCAGCGCGATGGCCGCGTCGACCGCTTCGGGCAGCAGGCCGAACGTGTCTGGTCGGTCATGATGTTCGG
CGCGAACTCGATCATCGATGGCGCGGTGATCAAGGTGATCACCGAGAAGATGAAGCGGATTCAGAAAGAAACCGGGGTCG
TAGTCCCGGTGCCGGAGGATTCCTCGAGTGTCTCCAATGCGCTGATGCAGGCGATGCTGCTGCATTCCAGCAAGCCGCGT
GCGCAGGGCATGTTCGACTTCGGCGATGCCGAGGCCAAGCTCGAAACCCAGTGGCGCAATGCCCAGGAAAACGCCCACAA
GAGCCAGACCCGCTATGCCCAGACGGCCCTGAAGCCCGAGGAAGTGCTGCCCGAATGGCACAAGCTGCGCGATCTGCTCG
GAGGACCGGACGAGGTTGAGCGCTTCACCCGCCGGGCCTTGGCGCGGCTTGACGTGCCGCTGGGGCAGCAAGGCCTACAT
TGGCGTGTGCGCTATGACGATATGCCCCAGCAGCTGCGTGAAAAGCTGGCGGCACGCGGACTGCGCGGCACCCGAATTAT
CGGCTTCCGCGACAAGCTGCCCCCTGATGTCGCCCAGGTCGGACGCACCCATCCACTGGTGGCGACGCTCGCCGGAACCA
TGGCCGAGGGGGCTCTTGACCCCAACGGCGTCGAAGGAAAGGCGACCCTCGGGCGAACCGGCGTGTGGATGACCCGCGGG
GTCGACAAGCTGACGGTCCTCCTCGCCCTGCGGCTGCGCTTCAAGCTGGTCACCAGTGGCCGCCGCACTTTGCTCGCCGA
AGAAGCGACCGGCATTGCCTTTGGTCCGCAATCCAATCAGCCCATCGCCATGGGGGCCGAGGCACTGGCTCTGCTGGAAC
ACGAGGCGACCCGCAGCATCGAGCCGCCGGCGAACCAGCGCCAGATCGATCTTGCGCTCGCTCGCCATGCTGATTTCCAG
CCGGCCATCGCGGCCTATGCCGCCCAGCGCGCAGCCGCGCTCTCGCACGATCATGAGCGCGTGAAGGCCGCCACAAGGGG
TGAAGGTATCACCACCACCGTCGAACCCGTGCTGCCCGCCGATATCATCGGCCTCTATGTCCTCGTGCCGGAGGCCAACT
GA

Upstream 100 bases:

>100_bases
GTGATCGCTGCGCGGAGCTCGGCCGAGAATTGATTGCCCTGCCCGATGAACCCGGCACGAACCCGCCGTCAGATCTGGCG
AATGCATTGGGAGTTTCTGC

Downstream 100 bases:

>100_bases
TGGCGCGCCGTTCTTCCTCCACCGAACTCGGCCTTGTCGCGCTCACCATCGAGGGCGGGCTGATCGCGCCTGAACAGGTG
CAGAAGGTCATCGCCGCCGA

Product: helicase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 933; Mature: 932

Protein sequence:

>933_residues
MTSVSVAPGQLQIGDLVHARGREWIVLAKPSDGLLRVRPLSGSEDDAILIAPKLERQPVHEASFALPNSDQLDTQDAARL
LTDALRLSLRRGAGPFRSAAHLGVEPRAYQLVPLLMALRLEVKRMLIADDVGIGKTIEAGMILREMLDRGEIDSFTVLCP
PHLVDQWVGELAQKFDIDSVAVTSARARSLEQGIALGDTIFGVHPFTVVSLDYIKADSRREGFAQACPKFVIVDEAHSCV
GGSEKGTQQRFSLLQRLVEDEARHMLLLTATPHSGNQDAYARLLSLLHPDLLRAPDTLDANALERYRRRLAQHFVQRRRP
DIADQWGEGRSFAEPMKADAPYSLTGDFQAFQEDVLEYCLGVATRADGAQARRLAFWGTLALMRCVGSSPAAALSALRNR
LSGMAEEALLGPILFDDDDDEFADTDIEPATAGDSEEIAELRQLISKAEGLNSRFADDPKFRELVAQVKDLTGKKEARPV
IFCRFIATAEAVGEALRSRFKSHTVEVVTGRLTPEERRERVEALEDHPNRILVATDCLSEGINLQSLFNAVVHYDLNWNP
TRHQQRDGRVDRFGQQAERVWSVMMFGANSIIDGAVIKVITEKMKRIQKETGVVVPVPEDSSSVSNALMQAMLLHSSKPR
AQGMFDFGDAEAKLETQWRNAQENAHKSQTRYAQTALKPEEVLPEWHKLRDLLGGPDEVERFTRRALARLDVPLGQQGLH
WRVRYDDMPQQLREKLAARGLRGTRIIGFRDKLPPDVAQVGRTHPLVATLAGTMAEGALDPNGVEGKATLGRTGVWMTRG
VDKLTVLLALRLRFKLVTSGRRTLLAEEATGIAFGPQSNQPIAMGAEALALLEHEATRSIEPPANQRQIDLALARHADFQ
PAIAAYAAQRAAALSHDHERVKAATRGEGITTTVEPVLPADIIGLYVLVPEAN

Sequences:

>Translated_933_residues
MTSVSVAPGQLQIGDLVHARGREWIVLAKPSDGLLRVRPLSGSEDDAILIAPKLERQPVHEASFALPNSDQLDTQDAARL
LTDALRLSLRRGAGPFRSAAHLGVEPRAYQLVPLLMALRLEVKRMLIADDVGIGKTIEAGMILREMLDRGEIDSFTVLCP
PHLVDQWVGELAQKFDIDSVAVTSARARSLEQGIALGDTIFGVHPFTVVSLDYIKADSRREGFAQACPKFVIVDEAHSCV
GGSEKGTQQRFSLLQRLVEDEARHMLLLTATPHSGNQDAYARLLSLLHPDLLRAPDTLDANALERYRRRLAQHFVQRRRP
DIADQWGEGRSFAEPMKADAPYSLTGDFQAFQEDVLEYCLGVATRADGAQARRLAFWGTLALMRCVGSSPAAALSALRNR
LSGMAEEALLGPILFDDDDDEFADTDIEPATAGDSEEIAELRQLISKAEGLNSRFADDPKFRELVAQVKDLTGKKEARPV
IFCRFIATAEAVGEALRSRFKSHTVEVVTGRLTPEERRERVEALEDHPNRILVATDCLSEGINLQSLFNAVVHYDLNWNP
TRHQQRDGRVDRFGQQAERVWSVMMFGANSIIDGAVIKVITEKMKRIQKETGVVVPVPEDSSSVSNALMQAMLLHSSKPR
AQGMFDFGDAEAKLETQWRNAQENAHKSQTRYAQTALKPEEVLPEWHKLRDLLGGPDEVERFTRRALARLDVPLGQQGLH
WRVRYDDMPQQLREKLAARGLRGTRIIGFRDKLPPDVAQVGRTHPLVATLAGTMAEGALDPNGVEGKATLGRTGVWMTRG
VDKLTVLLALRLRFKLVTSGRRTLLAEEATGIAFGPQSNQPIAMGAEALALLEHEATRSIEPPANQRQIDLALARHADFQ
PAIAAYAAQRAAALSHDHERVKAATRGEGITTTVEPVLPADIIGLYVLVPEAN
>Mature_932_residues
TSVSVAPGQLQIGDLVHARGREWIVLAKPSDGLLRVRPLSGSEDDAILIAPKLERQPVHEASFALPNSDQLDTQDAARLL
TDALRLSLRRGAGPFRSAAHLGVEPRAYQLVPLLMALRLEVKRMLIADDVGIGKTIEAGMILREMLDRGEIDSFTVLCPP
HLVDQWVGELAQKFDIDSVAVTSARARSLEQGIALGDTIFGVHPFTVVSLDYIKADSRREGFAQACPKFVIVDEAHSCVG
GSEKGTQQRFSLLQRLVEDEARHMLLLTATPHSGNQDAYARLLSLLHPDLLRAPDTLDANALERYRRRLAQHFVQRRRPD
IADQWGEGRSFAEPMKADAPYSLTGDFQAFQEDVLEYCLGVATRADGAQARRLAFWGTLALMRCVGSSPAAALSALRNRL
SGMAEEALLGPILFDDDDDEFADTDIEPATAGDSEEIAELRQLISKAEGLNSRFADDPKFRELVAQVKDLTGKKEARPVI
FCRFIATAEAVGEALRSRFKSHTVEVVTGRLTPEERRERVEALEDHPNRILVATDCLSEGINLQSLFNAVVHYDLNWNPT
RHQQRDGRVDRFGQQAERVWSVMMFGANSIIDGAVIKVITEKMKRIQKETGVVVPVPEDSSSVSNALMQAMLLHSSKPRA
QGMFDFGDAEAKLETQWRNAQENAHKSQTRYAQTALKPEEVLPEWHKLRDLLGGPDEVERFTRRALARLDVPLGQQGLHW
RVRYDDMPQQLREKLAARGLRGTRIIGFRDKLPPDVAQVGRTHPLVATLAGTMAEGALDPNGVEGKATLGRTGVWMTRGV
DKLTVLLALRLRFKLVTSGRRTLLAEEATGIAFGPQSNQPIAMGAEALALLEHEATRSIEPPANQRQIDLALARHADFQP
AIAAYAAQRAAALSHDHERVKAATRGEGITTTVEPVLPADIIGLYVLVPEAN

Specific function: Transcription Regulator That Activates Transcription By Stimulating RNA Polymerase (Rnap) Recycling In Case Of Stress Conditions Such As Supercoiled DNA Or High Salt Concentrations. Probably Acts By Releasing The Rnap, When It Is Trapped Or Immobilized On

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1786245, Length=213, Percent_Identity=28.6384976525822, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000330 [H]

Pfam domain/function: PF00271 Helicase_C; PF00176 SNF2_N [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 102862; Mature: 102731

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVSVAPGQLQIGDLVHARGREWIVLAKPSDGLLRVRPLSGSEDDAILIAPKLERQPVH
CCCCCCCCCCEEHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCC
EASFALPNSDQLDTQDAARLLTDALRLSLRRGAGPFRSAAHLGVEPRAYQLVPLLMALRL
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
EVKRMLIADDVGIGKTIEAGMILREMLDRGEIDSFTVLCPPHLVDQWVGELAQKFDIDSV
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCHH
AVTSARARSLEQGIALGDTIFGVHPFTVVSLDYIKADSRREGFAQACPKFVIVDEAHSCV
HHHHHHHHHHHHCCCCCCHHCCCCCHHEEEEHHHHCCCCCCCHHHHCCCEEEEECCHHHC
GGSEKGTQQRFSLLQRLVEDEARHMLLLTATPHSGNQDAYARLLSLLHPDLLRAPDTLDA
CCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCHHHHCCCCCCCH
NALERYRRRLAQHFVQRRRPDIADQWGEGRSFAEPMKADAPYSLTGDFQAFQEDVLEYCL
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
GVATRADGAQARRLAFWGTLALMRCVGSSPAAALSALRNRLSGMAEEALLGPILFDDDDD
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
EFADTDIEPATAGDSEEIAELRQLISKAEGLNSRFADDPKFRELVAQVKDLTGKKEARPV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE
IFCRFIATAEAVGEALRSRFKSHTVEVVTGRLTPEERRERVEALEDHPNRILVATDCLSE
EEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHC
GINLQSLFNAVVHYDLNWNPTRHQQRDGRVDRFGQQAERVWSVMMFGANSIIDGAVIKVI
CCCHHHHHHHHHEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TEKMKRIQKETGVVVPVPEDSSSVSNALMQAMLLHSSKPRAQGMFDFGDAEAKLETQWRN
HHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
AQENAHKSQTRYAQTALKPEEVLPEWHKLRDLLGGPDEVERFTRRALARLDVPLGQQGLH
HHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCE
WRVRYDDMPQQLREKLAARGLRGTRIIGFRDKLPPDVAQVGRTHPLVATLAGTMAEGALD
EEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCC
PNGVEGKATLGRTGVWMTRGVDKLTVLLALRLRFKLVTSGRRTLLAEEATGIAFGPQSNQ
CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCEEECCCCCC
PIAMGAEALALLEHEATRSIEPPANQRQIDLALARHADFQPAIAAYAAQRAAALSHDHER
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHH
VKAATRGEGITTTVEPVLPADIIGLYVLVPEAN
HHHHHCCCCCEEECCCCCCHHHEEEEEEEECCC
>Mature Secondary Structure 
TSVSVAPGQLQIGDLVHARGREWIVLAKPSDGLLRVRPLSGSEDDAILIAPKLERQPVH
CCCCCCCCCEEHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCEEEECCCCCCCCCC
EASFALPNSDQLDTQDAARLLTDALRLSLRRGAGPFRSAAHLGVEPRAYQLVPLLMALRL
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHH
EVKRMLIADDVGIGKTIEAGMILREMLDRGEIDSFTVLCPPHLVDQWVGELAQKFDIDSV
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCHH
AVTSARARSLEQGIALGDTIFGVHPFTVVSLDYIKADSRREGFAQACPKFVIVDEAHSCV
HHHHHHHHHHHHCCCCCCHHCCCCCHHEEEEHHHHCCCCCCCHHHHCCCEEEEECCHHHC
GGSEKGTQQRFSLLQRLVEDEARHMLLLTATPHSGNQDAYARLLSLLHPDLLRAPDTLDA
CCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCHHHHCCCCCCCH
NALERYRRRLAQHFVQRRRPDIADQWGEGRSFAEPMKADAPYSLTGDFQAFQEDVLEYCL
HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
GVATRADGAQARRLAFWGTLALMRCVGSSPAAALSALRNRLSGMAEEALLGPILFDDDDD
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
EFADTDIEPATAGDSEEIAELRQLISKAEGLNSRFADDPKFRELVAQVKDLTGKKEARPV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE
IFCRFIATAEAVGEALRSRFKSHTVEVVTGRLTPEERRERVEALEDHPNRILVATDCLSE
EEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEHHHHC
GINLQSLFNAVVHYDLNWNPTRHQQRDGRVDRFGQQAERVWSVMMFGANSIIDGAVIKVI
CCCHHHHHHHHHEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TEKMKRIQKETGVVVPVPEDSSSVSNALMQAMLLHSSKPRAQGMFDFGDAEAKLETQWRN
HHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
AQENAHKSQTRYAQTALKPEEVLPEWHKLRDLLGGPDEVERFTRRALARLDVPLGQQGLH
HHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCE
WRVRYDDMPQQLREKLAARGLRGTRIIGFRDKLPPDVAQVGRTHPLVATLAGTMAEGALD
EEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCC
PNGVEGKATLGRTGVWMTRGVDKLTVLLALRLRFKLVTSGRRTLLAEEATGIAFGPQSNQ
CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCEEECCCCCC
PIAMGAEALALLEHEATRSIEPPANQRQIDLALARHADFQPAIAAYAAQRAAALSHDHER
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHH
VKAATRGEGITTTVEPVLPADIIGLYVLVPEAN
HHHHHCCCCCEEECCCCCCHHHEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]