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The map label for this gene is intZ [H]

Identifier: 87198331

GI number: 87198331

Start: 331516

End: 332769

Strand: Direct

Name: intZ [H]

Synonym: Saro_0306

Alternate gene names: 87198331

Gene position: 331516-332769 (Clockwise)

Preceding gene: 87198330

Following gene: 87198332

Centisome position: 9.31

GC content: 61.64

Gene sequence:

>1254_bases
ATGGCGACAGGAAAAATCAGCAAGCGATCGATCGATGCATTGCGCCCCAATGCATCGAATCAGTTCCTGTGGGACACCGA
TCTCAAGGGGTTCGGCGCCAAGATCACACCCGCTGGTGCCATTTCCTATGTCCTGCAATTTCGCATGGGCGGACGCGAAG
CCAGCACCCGGCGTTATACTATCGGCGCGCATGGGTCGCCGTGGACGCCGACGACTGCCCGCGCGGAGGCAGAGCGCCTG
TTGCTGTTGATCGGCCAAGGGGTAGATCCCGTGGATGCCGACAAGCAGCGGAGACGTGAGGCGGTCGATCTTGCCTTTGC
CAATTACGCGGAACGATTCGCGCGCTCCTGCAAGGGTGATGGCTGGCGGCGACTGGTTGAGCGCGCGATCCGGCTGTATC
TGACACCGGTCCTGGGCAAAAAGGCGCTTCCTGCGATCAACCGGACCGATGTCGTTTCGGTGTTTGACAATATGCCGGCT
GACCAGGTTGCCAACCGCCGCAATGTCTTTGCGGTGCTTCGGCGCCTGTTCCGCTGGGCGGTCAGCCGGGGCGACCTCGA
CAGAAGTCCGATGGAAGGGATGGAAACGCCGCCGCCTGTCAAAGCCCGTGAACGGTGGCTGAGTGATGACGAGTTGCGGC
TGATCTGGAACGCCGCTCCGGAGTGTCACCGCTGCTTCGGCCCCATCGTTCGTCTGCTCATTGCGACAGGGCAACGCCGC
GAGGAAGTATCCGGCATGCGGTGGTCGGAATTGAGCCGGACCGACAAGCTCTGGACGCTACCGGGTGACAGGACCAAGAA
CGGCGAACCCAATACCATTCCGCTCAATGACCTTGCCGTCGCAGAGCTGGATGCCGCTGCGGGCGGGGACAAATGGCCGC
GCAAGGGACGGGTCTTTGCGACTTCCACCGGTGCTGGCTTCACCGGCTACGCTAAAGGCAAGGACAAGCTTGATCGCCTG
ATCGAACTGGCGGAGGGCGAACCTCTGCCGCCTTGGCGCCTCCACGATTTGCGGCGCACGCTCGCGACCAATTTTCAGCG
CCTCGGGGTGCGGTTCGAAGTCACCGAAGCCGTGTTGAACCACGTAGGCGGCTCGAGGTCCGGAGTGGCCGGAATCTACC
AGCGCCACGATTGGAAAGAGGAAAAGCGGCAAGCCCTGGACGACTGGAACAGCCATCTGGAGCAAATCCTGATGCGTCCT
TCACCTGGAAACAGGCAGGCTGCTTCGCAAGCAGCTGCGGATTTGGACAAGTAA

Upstream 100 bases:

>100_bases
AAATGGGCCATTTCGCCTACGCCAGCCTAACCGGCGATTTCCTAGTTTTTCCGCTTGCGTGATTGCCAGGTGATTGCCAG
AAAGGGACACGAGGTTCCGG

Downstream 100 bases:

>100_bases
CCCCCGCAGTCCGGCAATGTGTCGCGGTGAGTTGACATTCGCCGCTTCGCTTTGCCCTACCGCGACACGCCTCCGTCTGC
GCTGCCGGTAAATTCTGCAC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MATGKISKRSIDALRPNASNQFLWDTDLKGFGAKITPAGAISYVLQFRMGGREASTRRYTIGAHGSPWTPTTARAEAERL
LLLIGQGVDPVDADKQRRREAVDLAFANYAERFARSCKGDGWRRLVERAIRLYLTPVLGKKALPAINRTDVVSVFDNMPA
DQVANRRNVFAVLRRLFRWAVSRGDLDRSPMEGMETPPPVKARERWLSDDELRLIWNAAPECHRCFGPIVRLLIATGQRR
EEVSGMRWSELSRTDKLWTLPGDRTKNGEPNTIPLNDLAVAELDAAAGGDKWPRKGRVFATSTGAGFTGYAKGKDKLDRL
IELAEGEPLPPWRLHDLRRTLATNFQRLGVRFEVTEAVLNHVGGSRSGVAGIYQRHDWKEEKRQALDDWNSHLEQILMRP
SPGNRQAASQAAADLDK

Sequences:

>Translated_417_residues
MATGKISKRSIDALRPNASNQFLWDTDLKGFGAKITPAGAISYVLQFRMGGREASTRRYTIGAHGSPWTPTTARAEAERL
LLLIGQGVDPVDADKQRRREAVDLAFANYAERFARSCKGDGWRRLVERAIRLYLTPVLGKKALPAINRTDVVSVFDNMPA
DQVANRRNVFAVLRRLFRWAVSRGDLDRSPMEGMETPPPVKARERWLSDDELRLIWNAAPECHRCFGPIVRLLIATGQRR
EEVSGMRWSELSRTDKLWTLPGDRTKNGEPNTIPLNDLAVAELDAAAGGDKWPRKGRVFATSTGAGFTGYAKGKDKLDRL
IELAEGEPLPPWRLHDLRRTLATNFQRLGVRFEVTEAVLNHVGGSRSGVAGIYQRHDWKEEKRQALDDWNSHLEQILMRP
SPGNRQAASQAAADLDK
>Mature_416_residues
ATGKISKRSIDALRPNASNQFLWDTDLKGFGAKITPAGAISYVLQFRMGGREASTRRYTIGAHGSPWTPTTARAEAERLL
LLIGQGVDPVDADKQRRREAVDLAFANYAERFARSCKGDGWRRLVERAIRLYLTPVLGKKALPAINRTDVVSVFDNMPAD
QVANRRNVFAVLRRLFRWAVSRGDLDRSPMEGMETPPPVKARERWLSDDELRLIWNAAPECHRCFGPIVRLLIATGQRRE
EVSGMRWSELSRTDKLWTLPGDRTKNGEPNTIPLNDLAVAELDAAAGGDKWPRKGRVFATSTGAGFTGYAKGKDKLDRLI
ELAEGEPLPPWRLHDLRRTLATNFQRLGVRFEVTEAVLNHVGGSRSGVAGIYQRHDWKEEKRQALDDWNSHLEQILMRPS
PGNRQAASQAAADLDK

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=422, Percent_Identity=24.4075829383886, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46725; Mature: 46593

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKISKRSIDALRPNASNQFLWDTDLKGFGAKITPAGAISYVLQFRMGGREASTRRYT
CCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEE
IGAHGSPWTPTTARAEAERLLLLIGQGVDPVDADKQRRREAVDLAFANYAERFARSCKGD
ECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GWRRLVERAIRLYLTPVLGKKALPAINRTDVVSVFDNMPADQVANRRNVFAVLRRLFRWA
HHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VSRGDLDRSPMEGMETPPPVKARERWLSDDELRLIWNAAPECHRCFGPIVRLLIATGQRR
HHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHH
EEVSGMRWSELSRTDKLWTLPGDRTKNGEPNTIPLNDLAVAELDAAAGGDKWPRKGRVFA
HHHCCCCHHHHHCCCCEEECCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCEEEE
TSTGAGFTGYAKGKDKLDRLIELAEGEPLPPWRLHDLRRTLATNFQRLGVRFEVTEAVLN
EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEHHHHHHHH
HVGGSRSGVAGIYQRHDWKEEKRQALDDWNSHLEQILMRPSPGNRQAASQAAADLDK
HCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
ATGKISKRSIDALRPNASNQFLWDTDLKGFGAKITPAGAISYVLQFRMGGREASTRRYT
CCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEE
IGAHGSPWTPTTARAEAERLLLLIGQGVDPVDADKQRRREAVDLAFANYAERFARSCKGD
ECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
GWRRLVERAIRLYLTPVLGKKALPAINRTDVVSVFDNMPADQVANRRNVFAVLRRLFRWA
HHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VSRGDLDRSPMEGMETPPPVKARERWLSDDELRLIWNAAPECHRCFGPIVRLLIATGQRR
HHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHH
EEVSGMRWSELSRTDKLWTLPGDRTKNGEPNTIPLNDLAVAELDAAAGGDKWPRKGRVFA
HHHCCCCHHHHHCCCCEEECCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCCCCEEEE
TSTGAGFTGYAKGKDKLDRLIELAEGEPLPPWRLHDLRRTLATNFQRLGVRFEVTEAVLN
EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEHHHHHHHH
HVGGSRSGVAGIYQRHDWKEEKRQALDDWNSHLEQILMRPSPGNRQAASQAAADLDK
HCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]