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The map label for this gene is yagR [H]

Identifier: 86751609

GI number: 86751609

Start: 5097853

End: 5100096

Strand: Reverse

Name: yagR [H]

Synonym: RPB_4511

Alternate gene names: 86751609

Gene position: 5100096-5097853 (Counterclockwise)

Preceding gene: 86751610

Following gene: 86751607

Centisome position: 95.66

GC content: 68.94

Gene sequence:

>2244_bases
ATGCCGGGCGGCCAGCCCGATCCGCTGATCCTCAGCAAGCACGGCCAGATCGGCGCCTCGGTGCCGCGCGTCGACGGTCC
GCTGAAAGTCCGCGGCGCGGCACCTTTCGCGGCCGAGTTCGCGCTCGACGGCATGGTCTATGCCGCGCTGAAATTCAGCA
CCGTGCCGAAAGGCCGGATCGCGTCGCTCGAGACCACGCAGGCGGAGGCGGCCCCCGGCGTCGTCGCGGTGATGACCCAT
CGCAACGCCCCGCGCATGGCGCCGATGCCGATGTTCATGACCGCCGAAAAAGCCGGCGGGAGCGACGAACTGCCGATCAT
GCAGGACGATCGGATCTACTGGAACGGGCAGCCGGTCGCGGTGGTGGTCGCCGAGACTCAGGAGCAGGCGGACTACGCCG
TTTCGCTGATCCGCGCCACTTACGAATCCGACGCGGCCATCACCAGCTTCGCGACCGCCAAACGCAAAGGCACCGAGCCT
GCCCTGTTCATGGGGCAGCCGCTGAAGGTGGAAAAGGGATCGGCCGACGCGGCGTTCAAGGCCTCGGCCGCCAAGGTCGA
CGAGACCTACACCACGCCGCGGCACAATCACAATGCGATCGAGCCGCACGCCGCCACGGTGACGTGGGACGGCGATCGGC
TGATCGTGCACGATGCCTCGCAGGCGGTGTCGCACACCGCGTGGTCGCTGGGCCAAGTGTTCGGCATCGCCGAGGATCAG
GTGCGTGTGACGTCGCCCTTCGTCGGCGGCGGTTTCGGCGGCAAGTGCCTGTGGCAGCATCAGGTGCTGGGCGCGGCAGC
CTCGAAGCTTGCCGGCCGCCCGGTCCGGATCGCGCTTTCGCGCGAGGGCGTCTATCGCCTGATCGGCGGCCGCACGCTGA
CCGAGCAGCGCGTCGCCCTCGGCGCCGATCCGGACGGCCGCTTCAACGCCATCATCCACACCGGCGCGGTGGCGATGAGC
AACCACAGCGTGATGCCTGAGCCGTTCATCCTGCCGACGATGTCGAGCTATGGTTCGCCGAACATCAAGCTGGACGTCCA
GGTGGCGCGGCTCGACATGCTCGCCAACACCTTCATGCGGGCGCCTGGCGAATCCGTCGGCACCTTCGCGCTGGAATCCG
CGATCGATGAGCTGGCGGTGGCGCTCGGCATGGACCCGGTCGAACTGCGCATCCTGAACCAGCCGGACGAGGACCCATTG
AAAGGCACGCCGTTCTCGTCGCGACACATCGCCGAGGCGTGGCGCGCCGGCGCCGAGCGGTTCGGCTGGTCGAAACGCAA
CCCGACCGCCGCCAGCGTGCGCGACGGCGAATGGCTGGTCGGCACGGGCTGCGCCACCGCGACCTATCCGTATCACCGGA
TGCCGGGCGGGGCGGCGCGGATCACGCTGACGCGTGACGGCGCGGCCAAGGTCGAGGTCGCGGCGCACGAGATGGGAATG
GGCACCGCCACCGCCCACACCCAGGTCGTTGCCGAACGCCTTGGGCTCACGCGCGATCAGGTGAGCTTCGCCTATGGCGA
CTCGCTGATGCCCGGCGTCGTGCTCGCCGGCGGCTCGCAGCAGACCGCCTCGATCGGCGCCTCGGTGATCGCCGCGCATC
ACGTGCTGATCGCCGAGCTGCTCAAGCTCGCCGGCAACGACTCGCCGCTGGCGGGGCTGGGCGCCGACGAGGTCGGCACG
GTGAATGGCGGCCTCGCCAAGCTCGACGATCCGTCGCGGCACGAGAGCTACGTCTCGATCCTCACCCGCTCGGGCCGCGA
TCACGTCGCCGTCGAAGGCAGCGCCTCGGCGCCGCTCGAGACCCAGCATTGGTCGATGCATTCGTTCGGCGCGCTGTTCT
GCGAGGTCGGCGTCAACAGCGTCACCGGCGAAGTCCGGGTCCGGCGTTTTCTCGGATCGTATGATTGCGGCCGCATCCTC
AATCCGAAGACCGCGGCGAGCCAGTTCCGCGGCGGCATCATCATGGGCCTCGGCCTGGCGCTGATGGAGGAGACCCAGCT
CGACGACCGCAACGGCCGGGTGATGAATCCGAGCTTCGGCGATTATCACGTCCCGGTGCATCTCGATGTGCCGGCGATCG
ACGTGATCTGGACCGACATTCCGGATCCGCGCGCCCCGATGGGCGCCCGCGGCATCGGCGAGATCGGCATCACCGGCGTC
GGCGCCGCCGTCGCCAACGCGGTCTTCAACGCCACCGGCAAGCGCGTGCGCGATCTGCCGGTCACGCTCGACAAGTTGCT
GTGA

Upstream 100 bases:

>100_bases
GAGTGGCCCGATGAGGATCGCGGAAGAAACCAAGCAGGCCATGCGCGGCGCGATGCAAGGCGCGATGGAGAAGGTGATCG
CGCTGGCGCCCGACAGCTGG

Downstream 100 bases:

>100_bases
GCTGCGGGTCGGCGGCGAGGCCCGCCGGTCCGAAAACGTCGACGCCGACGTCGAACGGCCTCCCGAGCGGGAGGCCGTTT
GTCGAGAGCGGATCGATTGC

Product: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 747; Mature: 746

Protein sequence:

>747_residues
MPGGQPDPLILSKHGQIGASVPRVDGPLKVRGAAPFAAEFALDGMVYAALKFSTVPKGRIASLETTQAEAAPGVVAVMTH
RNAPRMAPMPMFMTAEKAGGSDELPIMQDDRIYWNGQPVAVVVAETQEQADYAVSLIRATYESDAAITSFATAKRKGTEP
ALFMGQPLKVEKGSADAAFKASAAKVDETYTTPRHNHNAIEPHAATVTWDGDRLIVHDASQAVSHTAWSLGQVFGIAEDQ
VRVTSPFVGGGFGGKCLWQHQVLGAAASKLAGRPVRIALSREGVYRLIGGRTLTEQRVALGADPDGRFNAIIHTGAVAMS
NHSVMPEPFILPTMSSYGSPNIKLDVQVARLDMLANTFMRAPGESVGTFALESAIDELAVALGMDPVELRILNQPDEDPL
KGTPFSSRHIAEAWRAGAERFGWSKRNPTAASVRDGEWLVGTGCATATYPYHRMPGGAARITLTRDGAAKVEVAAHEMGM
GTATAHTQVVAERLGLTRDQVSFAYGDSLMPGVVLAGGSQQTASIGASVIAAHHVLIAELLKLAGNDSPLAGLGADEVGT
VNGGLAKLDDPSRHESYVSILTRSGRDHVAVEGSASAPLETQHWSMHSFGALFCEVGVNSVTGEVRVRRFLGSYDCGRIL
NPKTAASQFRGGIIMGLGLALMEETQLDDRNGRVMNPSFGDYHVPVHLDVPAIDVIWTDIPDPRAPMGARGIGEIGITGV
GAAVANAVFNATGKRVRDLPVTLDKLL

Sequences:

>Translated_747_residues
MPGGQPDPLILSKHGQIGASVPRVDGPLKVRGAAPFAAEFALDGMVYAALKFSTVPKGRIASLETTQAEAAPGVVAVMTH
RNAPRMAPMPMFMTAEKAGGSDELPIMQDDRIYWNGQPVAVVVAETQEQADYAVSLIRATYESDAAITSFATAKRKGTEP
ALFMGQPLKVEKGSADAAFKASAAKVDETYTTPRHNHNAIEPHAATVTWDGDRLIVHDASQAVSHTAWSLGQVFGIAEDQ
VRVTSPFVGGGFGGKCLWQHQVLGAAASKLAGRPVRIALSREGVYRLIGGRTLTEQRVALGADPDGRFNAIIHTGAVAMS
NHSVMPEPFILPTMSSYGSPNIKLDVQVARLDMLANTFMRAPGESVGTFALESAIDELAVALGMDPVELRILNQPDEDPL
KGTPFSSRHIAEAWRAGAERFGWSKRNPTAASVRDGEWLVGTGCATATYPYHRMPGGAARITLTRDGAAKVEVAAHEMGM
GTATAHTQVVAERLGLTRDQVSFAYGDSLMPGVVLAGGSQQTASIGASVIAAHHVLIAELLKLAGNDSPLAGLGADEVGT
VNGGLAKLDDPSRHESYVSILTRSGRDHVAVEGSASAPLETQHWSMHSFGALFCEVGVNSVTGEVRVRRFLGSYDCGRIL
NPKTAASQFRGGIIMGLGLALMEETQLDDRNGRVMNPSFGDYHVPVHLDVPAIDVIWTDIPDPRAPMGARGIGEIGITGV
GAAVANAVFNATGKRVRDLPVTLDKLL
>Mature_746_residues
PGGQPDPLILSKHGQIGASVPRVDGPLKVRGAAPFAAEFALDGMVYAALKFSTVPKGRIASLETTQAEAAPGVVAVMTHR
NAPRMAPMPMFMTAEKAGGSDELPIMQDDRIYWNGQPVAVVVAETQEQADYAVSLIRATYESDAAITSFATAKRKGTEPA
LFMGQPLKVEKGSADAAFKASAAKVDETYTTPRHNHNAIEPHAATVTWDGDRLIVHDASQAVSHTAWSLGQVFGIAEDQV
RVTSPFVGGGFGGKCLWQHQVLGAAASKLAGRPVRIALSREGVYRLIGGRTLTEQRVALGADPDGRFNAIIHTGAVAMSN
HSVMPEPFILPTMSSYGSPNIKLDVQVARLDMLANTFMRAPGESVGTFALESAIDELAVALGMDPVELRILNQPDEDPLK
GTPFSSRHIAEAWRAGAERFGWSKRNPTAASVRDGEWLVGTGCATATYPYHRMPGGAARITLTRDGAAKVEVAAHEMGMG
TATAHTQVVAERLGLTRDQVSFAYGDSLMPGVVLAGGSQQTASIGASVIAAHHVLIAELLKLAGNDSPLAGLGADEVGTV
NGGLAKLDDPSRHESYVSILTRSGRDHVAVEGSASAPLETQHWSMHSFGALFCEVGVNSVTGEVRVRRFLGSYDCGRILN
PKTAASQFRGGIIMGLGLALMEETQLDDRNGRVMNPSFGDYHVPVHLDVPAIDVIWTDIPDPRAPMGARGIGEIGITGVG
AAVANAVFNATGKRVRDLPVTLDKLL

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=753, Percent_Identity=23.2403718459495, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI91823271, Length=788, Percent_Identity=22.8426395939086, Blast_Score=119, Evalue=1e-26,
Organism=Escherichia coli, GI1786478, Length=743, Percent_Identity=38.8963660834455, Blast_Score=415, Evalue=1e-117,
Organism=Escherichia coli, GI1789230, Length=756, Percent_Identity=28.3068783068783, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI1789246, Length=805, Percent_Identity=26.4596273291925, Blast_Score=181, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI17540638, Length=709, Percent_Identity=22.0028208744711, Blast_Score=113, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI32566215, Length=564, Percent_Identity=22.5177304964539, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24647201, Length=722, Percent_Identity=23.4072022160665, Blast_Score=119, Evalue=7e-27,
Organism=Drosophila melanogaster, GI24647193, Length=765, Percent_Identity=22.8758169934641, Blast_Score=119, Evalue=8e-27,
Organism=Drosophila melanogaster, GI24647195, Length=750, Percent_Identity=22.2666666666667, Blast_Score=109, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24647197, Length=679, Percent_Identity=22.9749631811487, Blast_Score=107, Evalue=4e-23,
Organism=Drosophila melanogaster, GI17737937, Length=716, Percent_Identity=23.6033519553073, Blast_Score=104, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 78953; Mature: 78821

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGGQPDPLILSKHGQIGASVPRVDGPLKVRGAAPFAAEFALDGMVYAALKFSTVPKGRI
CCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCEEEEEEEECCCCCCCE
ASLETTQAEAAPGVVAVMTHRNAPRMAPMPMFMTAEKAGGSDELPIMQDDRIYWNGQPVA
EEEECCHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEECCEEEECCCEEE
VVVAETQEQADYAVSLIRATYESDAAITSFATAKRKGTEPALFMGQPLKVEKGSADAAFK
EEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCEEEECCCCCCCEE
ASAAKVDETYTTPRHNHNAIEPHAATVTWDGDRLIVHDASQAVSHTAWSLGQVFGIAEDQ
HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHCCCCCC
VRVTSPFVGGGFGGKCLWQHQVLGAAASKLAGRPVRIALSREGVYRLIGGRTLTEQRVAL
EEEECCCCCCCCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCEECCCHHEE
GADPDGRFNAIIHTGAVAMSNHSVMPEPFILPTMSSYGSPNIKLDVQVARLDMLANTFMR
CCCCCCCEEEEEEECEEEECCCCCCCCCEEECCHHCCCCCCEEEEEEHHHHHHHHHHHHH
APGESVGTFALESAIDELAVALGMDPVELRILNQPDEDPLKGTPFSSRHIAEAWRAGAER
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FGWSKRNPTAASVRDGEWLVGTGCATATYPYHRMPGGAARITLTRDGAAKVEVAAHEMGM
CCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEHHHCCC
GTATAHTQVVAERLGLTRDQVSFAYGDSLMPGVVLAGGSQQTASIGASVIAAHHVLIAEL
CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
LKLAGNDSPLAGLGADEVGTVNGGLAKLDDPSRHESYVSILTRSGRDHVAVEGSASAPLE
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
TQHWSMHSFGALFCEVGVNSVTGEVRVRRFLGSYDCGRILNPKTAASQFRGGIIMGLGLA
CCCCCHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEHHHHH
LMEETQLDDRNGRVMNPSFGDYHVPVHLDVPAIDVIWTDIPDPRAPMGARGIGEIGITGV
HHHHHCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCHH
GAAVANAVFNATGKRVRDLPVTLDKLL
HHHHHHHHHHCCCCEEECCCCCHHHCC
>Mature Secondary Structure 
PGGQPDPLILSKHGQIGASVPRVDGPLKVRGAAPFAAEFALDGMVYAALKFSTVPKGRI
CCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCEEEEEEEECCCCCCCE
ASLETTQAEAAPGVVAVMTHRNAPRMAPMPMFMTAEKAGGSDELPIMQDDRIYWNGQPVA
EEEECCHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEECCEEEECCCEEE
VVVAETQEQADYAVSLIRATYESDAAITSFATAKRKGTEPALFMGQPLKVEKGSADAAFK
EEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCEEEECCCCCCCEE
ASAAKVDETYTTPRHNHNAIEPHAATVTWDGDRLIVHDASQAVSHTAWSLGQVFGIAEDQ
HHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHHHCCCCCC
VRVTSPFVGGGFGGKCLWQHQVLGAAASKLAGRPVRIALSREGVYRLIGGRTLTEQRVAL
EEEECCCCCCCCCCCEEEHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCEECCCHHEE
GADPDGRFNAIIHTGAVAMSNHSVMPEPFILPTMSSYGSPNIKLDVQVARLDMLANTFMR
CCCCCCCEEEEEEECEEEECCCCCCCCCEEECCHHCCCCCCEEEEEEHHHHHHHHHHHHH
APGESVGTFALESAIDELAVALGMDPVELRILNQPDEDPLKGTPFSSRHIAEAWRAGAER
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FGWSKRNPTAASVRDGEWLVGTGCATATYPYHRMPGGAARITLTRDGAAKVEVAAHEMGM
CCCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEHHHCCC
GTATAHTQVVAERLGLTRDQVSFAYGDSLMPGVVLAGGSQQTASIGASVIAAHHVLIAEL
CCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
LKLAGNDSPLAGLGADEVGTVNGGLAKLDDPSRHESYVSILTRSGRDHVAVEGSASAPLE
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
TQHWSMHSFGALFCEVGVNSVTGEVRVRRFLGSYDCGRILNPKTAASQFRGGIIMGLGLA
CCCCCHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEHHHHH
LMEETQLDDRNGRVMNPSFGDYHVPVHLDVPAIDVIWTDIPDPRAPMGARGIGEIGITGV
HHHHHCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCHH
GAAVANAVFNATGKRVRDLPVTLDKLL
HHHHHHHHHHCCCCEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]