Click here to switch to the map view.

The map label for this gene is 86751543

Identifier: 86751543

GI number: 86751543

Start: 5030778

End: 5031440

Strand: Reverse

Name: 86751543

Synonym: RPB_4445

Alternate gene names: NA

Gene position: 5031440-5030778 (Counterclockwise)

Preceding gene: 86751544

Following gene: 86751542

Centisome position: 94.37

GC content: 60.63

Gene sequence:

>663_bases
ATGACCCAGATTGTCACCCGGTTGTACGATTCCAGCAGCAAGCTCGCTGCGTTGGAAACCGACCTGAAGACGAACAACTA
CAAATATGCCGTCGTCACCGGCACTCAGGCCGGCAAGTCGAGTTCGGTGGACGACATCATCGCGGCGATGGGCCGGGCTT
ACGTGTCGCGCGGCGACGCCCGGACCTATGCCGACTACGTCAAGAAGGGCGCCGTCGTGGTCGCGGTTCAGGCCGAATTC
GGCTTCGCCGCCAAGGCGACGACGATCCTCGACAGCTACGGTCCGAACAAGATCAGCGTGCAATCGTCGGCCTCGGCCGC
CATGGAGATGAGCGAAGCGACGCCGTTCTCCAACATGATTCACGCCAAGACTCTGCTCGACACCTCGGGCAAGTACAAAT
CCTATTCCGGCGACTGGCTGCTCGTCGACAGCGACAAGACGTTCTCCGGAACGCCGCTTGTGATCAGCAGCAAGGGCCCA
TACCAGTCGTTTTCCGGAACGCCGCTGCTGCTCGACAGCAGCGGTCCCTACAAGTCCTTCTCGGGGACTCCTCTGTTGCT
GGACGACAGCGGTCCGTACAAATCCTATTCGGGCGAGCCGCTGCTGCTCAACAATCCGACCATCTTCTCCTCCTGGCTGG
GCCTGCCAGTGCTCTCCAAGTAA

Upstream 100 bases:

>100_bases
ATGGTCCCGCTGATCAAGCGACGGGACACATTGTTGATGCAGGGACAACTGAACTGATGCAGGGCGGCTCTCTCCGCCCT
GAGACTGAAACGGAGTAACT

Downstream 100 bases:

>100_bases
AGGAATTTGACCATGAGCGAATACAAAGGACACTCCGGCACGCCGCTGATTCTCGAGCAGAAGGGCGAGTACCAGAGCTT
CTCCGGCACGCCGCTGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTQIVTRLYDSSSKLAALETDLKTNNYKYAVVTGTQAGKSSSVDDIIAAMGRAYVSRGDARTYADYVKKGAVVVAVQAEF
GFAAKATTILDSYGPNKISVQSSASAAMEMSEATPFSNMIHAKTLLDTSGKYKSYSGDWLLVDSDKTFSGTPLVISSKGP
YQSFSGTPLLLDSSGPYKSFSGTPLLLDDSGPYKSYSGEPLLLNNPTIFSSWLGLPVLSK

Sequences:

>Translated_220_residues
MTQIVTRLYDSSSKLAALETDLKTNNYKYAVVTGTQAGKSSSVDDIIAAMGRAYVSRGDARTYADYVKKGAVVVAVQAEF
GFAAKATTILDSYGPNKISVQSSASAAMEMSEATPFSNMIHAKTLLDTSGKYKSYSGDWLLVDSDKTFSGTPLVISSKGP
YQSFSGTPLLLDSSGPYKSFSGTPLLLDDSGPYKSYSGEPLLLNNPTIFSSWLGLPVLSK
>Mature_219_residues
TQIVTRLYDSSSKLAALETDLKTNNYKYAVVTGTQAGKSSSVDDIIAAMGRAYVSRGDARTYADYVKKGAVVVAVQAEFG
FAAKATTILDSYGPNKISVQSSASAAMEMSEATPFSNMIHAKTLLDTSGKYKSYSGDWLLVDSDKTFSGTPLVISSKGPY
QSFSGTPLLLDSSGPYKSFSGTPLLLDDSGPYKSYSGEPLLLNNPTIFSSWLGLPVLSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23428; Mature: 23296

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQIVTRLYDSSSKLAALETDLKTNNYKYAVVTGTQAGKSSSVDDIIAAMGRAYVSRGDA
CHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
RTYADYVKKGAVVVAVQAEFGFAAKATTILDSYGPNKISVQSSASAAMEMSEATPFSNMI
HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHHHH
HAKTLLDTSGKYKSYSGDWLLVDSDKTFSGTPLVISSKGPYQSFSGTPLLLDSSGPYKSF
HHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC
SGTPLLLDDSGPYKSYSGEPLLLNNPTIFSSWLGLPVLSK
CCCEEEEECCCCCCCCCCCEEEEECCCHHHHHCCCCCCCC
>Mature Secondary Structure 
TQIVTRLYDSSSKLAALETDLKTNNYKYAVVTGTQAGKSSSVDDIIAAMGRAYVSRGDA
HHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
RTYADYVKKGAVVVAVQAEFGFAAKATTILDSYGPNKISVQSSASAAMEMSEATPFSNMI
HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCHHHHH
HAKTLLDTSGKYKSYSGDWLLVDSDKTFSGTPLVISSKGPYQSFSGTPLLLDSSGPYKSF
HHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC
SGTPLLLDDSGPYKSYSGEPLLLNNPTIFSSWLGLPVLSK
CCCEEEEECCCCCCCCCCCEEEEECCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA