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The map label for this gene is yqfA [H]

Identifier: 86751048

GI number: 86751048

Start: 4496360

End: 4497058

Strand: Reverse

Name: yqfA [H]

Synonym: RPB_3940

Alternate gene names: 86751048

Gene position: 4497058-4496360 (Counterclockwise)

Preceding gene: 86751053

Following gene: 86751047

Centisome position: 84.35

GC content: 62.95

Gene sequence:

>699_bases
ATGACGATCTTTCGGATCAAGCAAATCGATTCGCATTCCAGGATCGACTCCAGGGGATCGGTTCACTGGAATTACGATCG
CGCCGAGCTGATTGCGGATGGCGTGGTCCACGTGCTGGGCCTCGTCGCCGGCCTGATCGCCGTGACCGCGCTGATCACGC
TGACCGGAGTGTTCGCGAATACGTCCAAATTCGTCTCGGTCACGGTCTATGCCGCCGGCCTGCTGGCGATGCTGGGTTTG
TCGGCGGCGTATAATCTGTGGCCGGTGTCGCCGCGCAAATGGGTGCTGCGGCGGTTCGACCATTCGGCGATCTACATCCT
GATCGCCGCAACCTACACACCGATCATCAGCCAGATCAAGGACCAGATGTTCGCGCTGGCGCTGCTCGCCGGCGTCTGGA
GCGTCGCGCTGGTCGGCATCCTGCTGAAGCTGTTCAAGCCCGGCAAGTTCGACAAGCTCTCGGTCGGGCTGTATCTGGCG
ATGGGCTGGAGCGGGCTGATCGCCTATGATCATGTGGTCGAAACGCTGCCCAATCTGGCGATGTGGTTCCTCGCCGCCGG
CGGCGCGCTGTACACGCTCGGCGTGATCTTCCACGCCTGGCGCCGGCTGCGATTCCAGAACGCGATCTGGCACGCTTTCG
TGCTGGTCGCCGCCGCCTGCCACTATGTGGCGGTGATGGACCTGGTGCTGGCCGCCTAG

Upstream 100 bases:

>100_bases
AATCGGTCAGGAACGGCAGGACGCGCCGCGAATTGTATTGCATCGCCGCCGCCAACCATGAATGCGCCAGATCAATTCGA
GACAGGGTGTCGCTCCGCCT

Downstream 100 bases:

>100_bases
CGCCGCGGACGGCGTTTGGCGCTGTTCCCGTTGCGCATATCCCGGCTGCAAAACCGGGTGCCACTTCGGCCGGATCCGCG
CTAAGACACCCCCAACAACA

Product: Hly-III related proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTIFRIKQIDSHSRIDSRGSVHWNYDRAELIADGVVHVLGLVAGLIAVTALITLTGVFANTSKFVSVTVYAAGLLAMLGL
SAAYNLWPVSPRKWVLRRFDHSAIYILIAATYTPIISQIKDQMFALALLAGVWSVALVGILLKLFKPGKFDKLSVGLYLA
MGWSGLIAYDHVVETLPNLAMWFLAAGGALYTLGVIFHAWRRLRFQNAIWHAFVLVAAACHYVAVMDLVLAA

Sequences:

>Translated_232_residues
MTIFRIKQIDSHSRIDSRGSVHWNYDRAELIADGVVHVLGLVAGLIAVTALITLTGVFANTSKFVSVTVYAAGLLAMLGL
SAAYNLWPVSPRKWVLRRFDHSAIYILIAATYTPIISQIKDQMFALALLAGVWSVALVGILLKLFKPGKFDKLSVGLYLA
MGWSGLIAYDHVVETLPNLAMWFLAAGGALYTLGVIFHAWRRLRFQNAIWHAFVLVAAACHYVAVMDLVLAA
>Mature_231_residues
TIFRIKQIDSHSRIDSRGSVHWNYDRAELIADGVVHVLGLVAGLIAVTALITLTGVFANTSKFVSVTVYAAGLLAMLGLS
AAYNLWPVSPRKWVLRRFDHSAIYILIAATYTPIISQIKDQMFALALLAGVWSVALVGILLKLFKPGKFDKLSVGLYLAM
GWSGLIAYDHVVETLPNLAMWFLAAGGALYTLGVIFHAWRRLRFQNAIWHAFVLVAAACHYVAVMDLVLAA

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=228, Percent_Identity=27.1929824561404, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1789266, Length=206, Percent_Identity=37.8640776699029, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25472; Mature: 25340

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFRIKQIDSHSRIDSRGSVHWNYDRAELIADGVVHVLGLVAGLIAVTALITLTGVFAN
CCEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TSKFVSVTVYAAGLLAMLGLSAAYNLWPVSPRKWVLRRFDHSAIYILIAATYTPIISQIK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHH
DQMFALALLAGVWSVALVGILLKLFKPGKFDKLSVGLYLAMGWSGLIAYDHVVETLPNLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHH
MWFLAAGGALYTLGVIFHAWRRLRFQNAIWHAFVLVAAACHYVAVMDLVLAA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIFRIKQIDSHSRIDSRGSVHWNYDRAELIADGVVHVLGLVAGLIAVTALITLTGVFAN
CEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TSKFVSVTVYAAGLLAMLGLSAAYNLWPVSPRKWVLRRFDHSAIYILIAATYTPIISQIK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHH
DQMFALALLAGVWSVALVGILLKLFKPGKFDKLSVGLYLAMGWSGLIAYDHVVETLPNLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCHHHHHHHHHHHHHHHH
MWFLAAGGALYTLGVIFHAWRRLRFQNAIWHAFVLVAAACHYVAVMDLVLAA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]