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The map label for this gene is cph2 [H]

Identifier: 86750961

GI number: 86750961

Start: 4407381

End: 4408634

Strand: Reverse

Name: cph2 [H]

Synonym: RPB_3853

Alternate gene names: 86750961

Gene position: 4408634-4407381 (Counterclockwise)

Preceding gene: 86750962

Following gene: 86750958

Centisome position: 82.69

GC content: 65.07

Gene sequence:

>1254_bases
ATGCCGGATTCGACCGATCAAGCGCAGGCCGCACGCATCCTCGTCGTCGACGACGACCCGGTGCAGGGTGCCATCATCAG
CGGCGTGTGTCGACGACGCGGCTATCGACCAACCTTCGCATCGTCGTATCAGGCAGCGGTCGATCAGATCGCCGCGGGCG
ACTTCGAGTGTATCACCATCGATCTTTCGCTCGGTGATCGCGACGGAATCGAATTGCTGCGTCTGATCGCCGGCGGCGGC
AGGTCGCCGCGCGTGATCGTGATCAGCGGTTGCGACCAGCGGATCCTCAGCGCGACGGTCAGAATGGCGCACGCGGTCGG
AGTCGTCGATGCGGTGTCGCTGCAGAAGCCGATCGATCTGGCCTCGCTCGGCGACGCGCTGAGCTTCGGCGCCGGTGAAC
AGCCGTCGTTGCGGCATCGGCCCGATCGGCAATCACGTCCGGTCACGGCAGCCGATCTGTCGCGGGGCCTCGAGACCGGC
GAGCTCTATCCGGCGTTTCAGCCGAAGGTGAATCTCGCGACCGGACGGGTGGTCGGTTGTGAAGCGCTGGCGCGATGGGA
CAGTCCGACCTTCGGCTCGGTCGGCCCCGATGTGTTCATCCCGCTCGCCGAACAGAGCGGGCTGATCAAGCCGCTCACGC
TGCTGATGCTCCGGCAGTCGATCGAGCTCGCGCGCTATTTCTTCGACATCGATCCCTCGTTCTCGGTGGCCGTCAATCTG
TCGGCGGCGCTGCTGTCGGATACGACCATCCCCGAAGAGGTCGAGCGATTGCTCGATGGGACCGGTCTGCCGGCGCGCTC
GCTGATCATCGAGGTCACCGAGTCCACGGCGATGACCGATATCGCCTGCGCGATGGACATCATGCTGCGGCTTCGGATCA
AGGGCGTCGGGATTTCGATCGACGATTTCGGTACCGGCTATTCATCGCTCGCGGTGCTCGCCAGAATGCCCTTCAGCGAG
CTCAAGATCGATCGCAGTTTCGTCAGGGATTGCCTCACCGACGCCGACATGTGGAAAGTGGTGTCGGTGTCGGTCGCGAT
CGCGCATCAGTACAACATGCAGGCGGTGGCCGAGGGCATCGAGGATGCCGAAACCTGGCGGGCCCTCGATGGATTGGGGT
GCGATATCGGCCAGGGATTCGGCTTCTCGCGGGCGCTGCGCAGAGGCGCTTTCGTCGAGTGGTGCCGGCACTGGGACGAG
CGGCTGACGTCGGTCGGTCCGGCGGCGGAGCGACACCGCGCCTGCGCCACCTGA

Upstream 100 bases:

>100_bases
GTGGATGCCGGTCTTCGGAAACGTCGTGCTCGAACGAGAAACGCGAGCGGGACGCATAGTCGAAGATTGATCGTCCTGCT
CGAATACAACGGAATCGTCG

Downstream 100 bases:

>100_bases
ATTGCGCCCCGCCCGGCGCGCCGGCTCATGCCGGGTCGGCGAATTCGACCAGACAATCGTCACCGATCGGCGCCCGCTGT
GCGGCTGCGAACGCGGCCCT

Product: response regulator receiver modulated diguanylate phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MPDSTDQAQAARILVVDDDPVQGAIISGVCRRRGYRPTFASSYQAAVDQIAAGDFECITIDLSLGDRDGIELLRLIAGGG
RSPRVIVISGCDQRILSATVRMAHAVGVVDAVSLQKPIDLASLGDALSFGAGEQPSLRHRPDRQSRPVTAADLSRGLETG
ELYPAFQPKVNLATGRVVGCEALARWDSPTFGSVGPDVFIPLAEQSGLIKPLTLLMLRQSIELARYFFDIDPSFSVAVNL
SAALLSDTTIPEEVERLLDGTGLPARSLIIEVTESTAMTDIACAMDIMLRLRIKGVGISIDDFGTGYSSLAVLARMPFSE
LKIDRSFVRDCLTDADMWKVVSVSVAIAHQYNMQAVAEGIEDAETWRALDGLGCDIGQGFGFSRALRRGAFVEWCRHWDE
RLTSVGPAAERHRACAT

Sequences:

>Translated_417_residues
MPDSTDQAQAARILVVDDDPVQGAIISGVCRRRGYRPTFASSYQAAVDQIAAGDFECITIDLSLGDRDGIELLRLIAGGG
RSPRVIVISGCDQRILSATVRMAHAVGVVDAVSLQKPIDLASLGDALSFGAGEQPSLRHRPDRQSRPVTAADLSRGLETG
ELYPAFQPKVNLATGRVVGCEALARWDSPTFGSVGPDVFIPLAEQSGLIKPLTLLMLRQSIELARYFFDIDPSFSVAVNL
SAALLSDTTIPEEVERLLDGTGLPARSLIIEVTESTAMTDIACAMDIMLRLRIKGVGISIDDFGTGYSSLAVLARMPFSE
LKIDRSFVRDCLTDADMWKVVSVSVAIAHQYNMQAVAEGIEDAETWRALDGLGCDIGQGFGFSRALRRGAFVEWCRHWDE
RLTSVGPAAERHRACAT
>Mature_416_residues
PDSTDQAQAARILVVDDDPVQGAIISGVCRRRGYRPTFASSYQAAVDQIAAGDFECITIDLSLGDRDGIELLRLIAGGGR
SPRVIVISGCDQRILSATVRMAHAVGVVDAVSLQKPIDLASLGDALSFGAGEQPSLRHRPDRQSRPVTAADLSRGLETGE
LYPAFQPKVNLATGRVVGCEALARWDSPTFGSVGPDVFIPLAEQSGLIKPLTLLMLRQSIELARYFFDIDPSFSVAVNLS
AALLSDTTIPEEVERLLDGTGLPARSLIIEVTESTAMTDIACAMDIMLRLRIKGVGISIDDFGTGYSSLAVLARMPFSEL
KIDRSFVRDCLTDADMWKVVSVSVAIAHQYNMQAVAEGIEDAETWRALDGLGCDIGQGFGFSRALRRGAFVEWCRHWDER
LTSVGPAAERHRACAT

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=244, Percent_Identity=35.2459016393443, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=36.0655737704918, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1787541, Length=250, Percent_Identity=34.8, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1786507, Length=249, Percent_Identity=32.5301204819277, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081980, Length=266, Percent_Identity=31.203007518797, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788502, Length=267, Percent_Identity=32.9588014981273, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI87081845, Length=233, Percent_Identity=32.618025751073, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=29.3650793650794, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=31.5352697095436, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788849, Length=228, Percent_Identity=31.5789473684211, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI226510982, Length=255, Percent_Identity=32.5490196078431, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082096, Length=195, Percent_Identity=31.2820512820513, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 44985; Mature: 44854

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSTDQAQAARILVVDDDPVQGAIISGVCRRRGYRPTFASSYQAAVDQIAAGDFECITI
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEE
DLSLGDRDGIELLRLIAGGGRSPRVIVISGCDQRILSATVRMAHAVGVVDAVSLQKPIDL
EEECCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ASLGDALSFGAGEQPSLRHRPDRQSRPVTAADLSRGLETGELYPAFQPKVNLATGRVVGC
HHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCEECH
EALARWDSPTFGSVGPDVFIPLAEQSGLIKPLTLLMLRQSIELARYFFDIDPSFSVAVNL
HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
SAALLSDTTIPEEVERLLDGTGLPARSLIIEVTESTAMTDIACAMDIMLRLRIKGVGISI
HHHHHCCCCCHHHHHHHHCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHEEEECEEEE
DDFGTGYSSLAVLARMPFSELKIDRSFVRDCLTDADMWKVVSVSVAIAHQYNMQAVAEGI
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEHHHCCHHHHHHCH
EDAETWRALDGLGCDIGQGFGFSRALRRGAFVEWCRHWDERLTSVGPAAERHRACAT
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
PDSTDQAQAARILVVDDDPVQGAIISGVCRRRGYRPTFASSYQAAVDQIAAGDFECITI
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEE
DLSLGDRDGIELLRLIAGGGRSPRVIVISGCDQRILSATVRMAHAVGVVDAVSLQKPIDL
EEECCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ASLGDALSFGAGEQPSLRHRPDRQSRPVTAADLSRGLETGELYPAFQPKVNLATGRVVGC
HHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCEECH
EALARWDSPTFGSVGPDVFIPLAEQSGLIKPLTLLMLRQSIELARYFFDIDPSFSVAVNL
HHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
SAALLSDTTIPEEVERLLDGTGLPARSLIIEVTESTAMTDIACAMDIMLRLRIKGVGISI
HHHHHCCCCCHHHHHHHHCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHEEEECEEEE
DDFGTGYSSLAVLARMPFSELKIDRSFVRDCLTDADMWKVVSVSVAIAHQYNMQAVAEGI
CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEHHHCCHHHHHHCH
EDAETWRALDGLGCDIGQGFGFSRALRRGAFVEWCRHWDERLTSVGPAAERHRACAT
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]