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The map label for this gene is ydhC [H]

Identifier: 86750537

GI number: 86750537

Start: 3923805

End: 3924536

Strand: Direct

Name: ydhC [H]

Synonym: RPB_3426

Alternate gene names: 86750537

Gene position: 3923805-3924536 (Clockwise)

Preceding gene: 86750529

Following gene: 86750538

Centisome position: 73.59

GC content: 65.85

Gene sequence:

>732_bases
ATGACCGCTCGCGCCAGAATCAGACCGATCGACGTCGTCGCCGAACCCGATCTGGCGATGCCGCCGCTTTCGCCCGAGGT
CAGCTACAAGGCCAAGGCCTATCAGGCGCTGAAACAGGCCATCCTCAGGATGGACATCTACACGGCGCCCGAGCCGGTGA
TGCTCGACGAGCGCGCGCTGTCGGACAAGCTCGGCGTCAGCCGCACGCCGATCCGCGAGGCGATCGCGATGCTCGAGCAG
GACGGGCTGGTGAAAGCCGTGCCGCGCCGCGGCATCATGGTGGTGCGCCGGACCAAGGCGGAAATCGTCGACATGATCCG
CGCCTGGGCGGCGCTGGAGAGCATGGCGGCGCGGCTGATCACCACGATGGCGCGCAAGCGCGACATCACCGCGCTACGCG
ACGTGTTTCAGGCGTTCGGCCCCGACCATCTGCCGCAGGATCACATCGAGGAATATTCCCGCGCCAACATCGTGTTCCAC
CAGGCGCTGATCTCGCTCAGCGAGTCGCAGGTGCTGGTCGACATGACCGACGACATCCTGATCCACGTGCGCGGCTATCG
CCAGCTCACGATCGGCCGCAAGGAACGCATCGCCGCATCATTGCCCGAGCATCTGGCGATGATCGAGGCGATGGAAGCTC
GCGACACCGAACTCGCCGAGAAGCTGGCGCGCGATCACACGCTGCGGCTCGCAGCCTATGTCGAGGCGCACGGCCAGGAG
TTGTTCGCGTGA

Upstream 100 bases:

>100_bases
GCAGCGTAATCGGTGGGCGCGGACGGCCTTGCCTTGTCTCCCTGGCATCTGGCATACCAGCGCACAGACAGACGCCGTTT
CGGATCGGCATGGAAGATCG

Downstream 100 bases:

>100_bases
GACCCGTTGTTCGCGTGATACCCGTTGTTCGCGTGATACCCGCTCGCCCTCTGATAAACGCCCCCTCCCCGCCATTGCGA
GGAGCCCCCGGATCAGCGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTARARIRPIDVVAEPDLAMPPLSPEVSYKAKAYQALKQAILRMDIYTAPEPVMLDERALSDKLGVSRTPIREAIAMLEQ
DGLVKAVPRRGIMVVRRTKAEIVDMIRAWAALESMAARLITTMARKRDITALRDVFQAFGPDHLPQDHIEEYSRANIVFH
QALISLSESQVLVDMTDDILIHVRGYRQLTIGRKERIAASLPEHLAMIEAMEARDTELAEKLARDHTLRLAAYVEAHGQE
LFA

Sequences:

>Translated_243_residues
MTARARIRPIDVVAEPDLAMPPLSPEVSYKAKAYQALKQAILRMDIYTAPEPVMLDERALSDKLGVSRTPIREAIAMLEQ
DGLVKAVPRRGIMVVRRTKAEIVDMIRAWAALESMAARLITTMARKRDITALRDVFQAFGPDHLPQDHIEEYSRANIVFH
QALISLSESQVLVDMTDDILIHVRGYRQLTIGRKERIAASLPEHLAMIEAMEARDTELAEKLARDHTLRLAAYVEAHGQE
LFA
>Mature_242_residues
TARARIRPIDVVAEPDLAMPPLSPEVSYKAKAYQALKQAILRMDIYTAPEPVMLDERALSDKLGVSRTPIREAIAMLEQD
GLVKAVPRRGIMVVRRTKAEIVDMIRAWAALESMAARLITTMARKRDITALRDVFQAFGPDHLPQDHIEEYSRANIVFHQ
ALISLSESQVLVDMTDDILIHVRGYRQLTIGRKERIAASLPEHLAMIEAMEARDTELAEKLARDHTLRLAAYVEAHGQEL
FA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27371; Mature: 27240

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARARIRPIDVVAEPDLAMPPLSPEVSYKAKAYQALKQAILRMDIYTAPEPVMLDERAL
CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
SDKLGVSRTPIREAIAMLEQDGLVKAVPRRGIMVVRRTKAEIVDMIRAWAALESMAARLI
HHHCCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
TTMARKRDITALRDVFQAFGPDHLPQDHIEEYSRANIVFHQALISLSESQVLVDMTDDIL
HHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE
IHVRGYRQLTIGRKERIAASLPEHLAMIEAMEARDTELAEKLARDHTLRLAAYVEAHGQE
EEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFA
HCC
>Mature Secondary Structure 
TARARIRPIDVVAEPDLAMPPLSPEVSYKAKAYQALKQAILRMDIYTAPEPVMLDERAL
CCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHH
SDKLGVSRTPIREAIAMLEQDGLVKAVPRRGIMVVRRTKAEIVDMIRAWAALESMAARLI
HHHCCCCCCCHHHHHHHHHCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
TTMARKRDITALRDVFQAFGPDHLPQDHIEEYSRANIVFHQALISLSESQVLVDMTDDIL
HHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE
IHVRGYRQLTIGRKERIAASLPEHLAMIEAMEARDTELAEKLARDHTLRLAAYVEAHGQE
EEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]