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The map label for this gene is yidL [C]

Identifier: 86750528

GI number: 86750528

Start: 3905955

End: 3906854

Strand: Direct

Name: yidL [C]

Synonym: RPB_3417

Alternate gene names: 86750528

Gene position: 3905955-3906854 (Clockwise)

Preceding gene: 86750524

Following gene: 86750529

Centisome position: 73.26

GC content: 66.33

Gene sequence:

>900_bases
ATGGGAACGCTCGGCAATTCCGTCGACAAATATGTCACCGGCCGGATGCTCCAGACCTCCAACGACCGCCGCTGGTCGCA
TCTGCTGGCAGAGCGCTGGAGCCACCAAGCGGGTGAGCTGCCGTCGCTGCTGCCGCGCGACACCGAGATCGCCGTGCTGC
TGCGCGGCAGTTCCGTGGTGGATCGCGCGGGCGGCGGCATGCGCCAGCGGACCCATGGCAGACGCGGAACGATCTGGCTG
TGCCCGGCTGGCATCCGCGAGGATTTCATTCGCGTCGAGAGCGAGATGCACGAGTGTCTGCATATTTTTCTGCCCGGCCG
ACCGTTCGACGATACGATGCTGCAGGACATGGACATCGACCCGGCGCGGATCGGCATTCGCTACGAGGCGATCGGTCAGG
ATATCTTCATCGACTATGTCGCCGACCAGATCGTCCGGGAACTTGCCGAAGAGAGCTCGACAGGGCGGCTGCTGATCGAG
AGTCTGGGACGTGCGCTGACCGCCCATCTGGTGCATCGCTACGCCGACACGGCGGTGCCGCGCAAGCCGGCGAATGCTGC
CAGCCGCCCGCTCGACGCCAAGCGCCTGACACGGGTGACGGACTTCATCAACGCCTCGGTCGAGCGCGATTTCACCGTCA
GCGACCTCGCCGCGGTCGCCTGCATGAGCCCGGCGCATTTCTCCCGCAGCTTCAAGGCGGCGACCGGCTGCGCGCCGCAT
GAATATCTCAGCCGGCAGCGGCTCGATCTGGCCAAGCGGCTGCTGGCGAGCGGCCATCGCTCGCTGGCCGATATCGCCTA
CGCCACCGGCTTCTCGTCGCAGGCGAACTTCAACCGGGCGTTTCGCAAGGCGCTCGGCACCACGCCCAGCGCCTACCGCG
CGCAACAGCGATCGGATTGA

Upstream 100 bases:

>100_bases
GGGCTGCTATGACGGCCCAAATCCCCTGCTTCGCTATCTGGCATAATAATTGCTAATTCTCGGATCCGGTCCGCTCTCTC
GCCAACCGTAGAGGTCCAAG

Downstream 100 bases:

>100_bases
AGAATCAGTTCGCGACCGGGCCGTTCTTCACGGCCGTTGAGCCGCATTGATCAGGCGTTCAAAAAACAGTTCCTGTTCTC
CCGCCGATTTGCCATACGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MGTLGNSVDKYVTGRMLQTSNDRRWSHLLAERWSHQAGELPSLLPRDTEIAVLLRGSSVVDRAGGGMRQRTHGRRGTIWL
CPAGIREDFIRVESEMHECLHIFLPGRPFDDTMLQDMDIDPARIGIRYEAIGQDIFIDYVADQIVRELAEESSTGRLLIE
SLGRALTAHLVHRYADTAVPRKPANAASRPLDAKRLTRVTDFINASVERDFTVSDLAAVACMSPAHFSRSFKAATGCAPH
EYLSRQRLDLAKRLLASGHRSLADIAYATGFSSQANFNRAFRKALGTTPSAYRAQQRSD

Sequences:

>Translated_299_residues
MGTLGNSVDKYVTGRMLQTSNDRRWSHLLAERWSHQAGELPSLLPRDTEIAVLLRGSSVVDRAGGGMRQRTHGRRGTIWL
CPAGIREDFIRVESEMHECLHIFLPGRPFDDTMLQDMDIDPARIGIRYEAIGQDIFIDYVADQIVRELAEESSTGRLLIE
SLGRALTAHLVHRYADTAVPRKPANAASRPLDAKRLTRVTDFINASVERDFTVSDLAAVACMSPAHFSRSFKAATGCAPH
EYLSRQRLDLAKRLLASGHRSLADIAYATGFSSQANFNRAFRKALGTTPSAYRAQQRSD
>Mature_298_residues
GTLGNSVDKYVTGRMLQTSNDRRWSHLLAERWSHQAGELPSLLPRDTEIAVLLRGSSVVDRAGGGMRQRTHGRRGTIWLC
PAGIREDFIRVESEMHECLHIFLPGRPFDDTMLQDMDIDPARIGIRYEAIGQDIFIDYVADQIVRELAEESSTGRLLIES
LGRALTAHLVHRYADTAVPRKPANAASRPLDAKRLTRVTDFINASVERDFTVSDLAAVACMSPAHFSRSFKAATGCAPHE
YLSRQRLDLAKRLLASGHRSLADIAYATGFSSQANFNRAFRKALGTTPSAYRAQQRSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33280; Mature: 33149

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTLGNSVDKYVTGRMLQTSNDRRWSHLLAERWSHQAGELPSLLPRDTEIAVLLRGSSVV
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHH
DRAGGGMRQRTHGRRGTIWLCPAGIREDFIRVESEMHECLHIFLPGRPFDDTMLQDMDID
HHCCCCHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC
PARIGIRYEAIGQDIFIDYVADQIVRELAEESSTGRLLIESLGRALTAHLVHRYADTAVP
HHHHCEEHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RKPANAASRPLDAKRLTRVTDFINASVERDFTVSDLAAVACMSPAHFSRSFKAATGCAPH
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHH
EYLSRQRLDLAKRLLASGHRSLADIAYATGFSSQANFNRAFRKALGTTPSAYRAQQRSD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure 
GTLGNSVDKYVTGRMLQTSNDRRWSHLLAERWSHQAGELPSLLPRDTEIAVLLRGSSVV
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHH
DRAGGGMRQRTHGRRGTIWLCPAGIREDFIRVESEMHECLHIFLPGRPFDDTMLQDMDID
HHCCCCHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCC
PARIGIRYEAIGQDIFIDYVADQIVRELAEESSTGRLLIESLGRALTAHLVHRYADTAVP
HHHHCEEHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RKPANAASRPLDAKRLTRVTDFINASVERDFTVSDLAAVACMSPAHFSRSFKAATGCAPH
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHH
EYLSRQRLDLAKRLLASGHRSLADIAYATGFSSQANFNRAFRKALGTTPSAYRAQQRSD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]