| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yfeC [H]
Identifier: 86750515
GI number: 86750515
Start: 3890317
End: 3891192
Strand: Direct
Name: yfeC [H]
Synonym: RPB_3404
Alternate gene names: 86750515
Gene position: 3890317-3891192 (Clockwise)
Preceding gene: 86750514
Following gene: 86750516
Centisome position: 72.97
GC content: 68.38
Gene sequence:
>876_bases ATGGCCGACGGCTCGCTGTTCGCCGAGATGCTGGTGCCGTTCGGCTACGACTACATGCTCAAGGCGATGTGGGTCAGCGC GCTGGTCGGCGGCGCCTGCGCCTTTCTGTCGGCCTATCTGATGCTGAAGGGCTGGTCGCTGATGGGCGACGCCCTGGCGC ATTCGATCGTGCCCGGCGTCGCGGCCGCCTATATCATCGGCGCGCCGTTCGCGGTCGGCGCCTTCGTCGCCGGACTGCTC GCCGCGGCCGGCATGCAGTTCGTCAAGCTGAACTCGCGCCTGCGCGAGGACGCGGTGATCGGACTGGTGTTCACCACGCT GTTCGCGCTCGGCCTGCTGATGGCCTCGATCTGGCCCGCCTCGGTCAGCGTCCAGACCATCGTGCTCGGCAACATCCTCG CGATCTCCGACGCGGACGTCGTGCAGGTGGCGGTGATCTCGGGGGTCTCGCTCGGCATCCTGGCGCTGCTGTGGAAGGAC CTGATGGTGACGTTCTTCGACGAGAACCACGCGCGCAGCATCGGCCTCAATCCGCGCGCGCTCAGGATCGTGTTCTTCAC CCTGCTCAGCGCCTGCACCGTGGCGGCGCTGCAGACGGTCGGCGCCTGCCTCGTCATCGCGATGGTGGTCACACCCGGCG CCACCGCCTATCTCCTCACCGACCGCTTCGGCCGGCTGATCCTGATCAGCATCTCGATCGGCGCGATCACGAGCTTCGTC GGCGCCTATCTCAGCTATTTCCTCGACGGCGCGACCGGCGGCGTGATCGTCACGCTGCAGACGCTGGTGTTCCTGACGGC GTTCTATCTGGCGCCGAAGCACGGCCTGCTGGCGGCGCGCGGGCGCCGGCTCGCCGCCGCGGAGGCCGGGTCGTGA
Upstream 100 bases:
>100_bases GACGACGACCGCGGGCAGTTCACGGTGATCAGCGACGACGAACGGCCGCTCGTGCTGCTCGGCGAGCGCCGGAGCCAGCG CCAGGACGAGGAGACCTGAG
Downstream 100 bases:
>100_bases GCGAGCTGTTCGACTGGTTCGCCGGGCCGCTGGCCTATCCCTTCATGCAGCGCGCGCTGGTGATATCGGTGATGGTCGCG GCGGTCTGCGCCGTGCTGTC
Product: hypothetical protein
Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MADGSLFAEMLVPFGYDYMLKAMWVSALVGGACAFLSAYLMLKGWSLMGDALAHSIVPGVAAAYIIGAPFAVGAFVAGLL AAAGMQFVKLNSRLREDAVIGLVFTTLFALGLLMASIWPASVSVQTIVLGNILAISDADVVQVAVISGVSLGILALLWKD LMVTFFDENHARSIGLNPRALRIVFFTLLSACTVAALQTVGACLVIAMVVTPGATAYLLTDRFGRLILISISIGAITSFV GAYLSYFLDGATGGVIVTLQTLVFLTAFYLAPKHGLLAARGRRLAAAEAGS
Sequences:
>Translated_291_residues MADGSLFAEMLVPFGYDYMLKAMWVSALVGGACAFLSAYLMLKGWSLMGDALAHSIVPGVAAAYIIGAPFAVGAFVAGLL AAAGMQFVKLNSRLREDAVIGLVFTTLFALGLLMASIWPASVSVQTIVLGNILAISDADVVQVAVISGVSLGILALLWKD LMVTFFDENHARSIGLNPRALRIVFFTLLSACTVAALQTVGACLVIAMVVTPGATAYLLTDRFGRLILISISIGAITSFV GAYLSYFLDGATGGVIVTLQTLVFLTAFYLAPKHGLLAARGRRLAAAEAGS >Mature_290_residues ADGSLFAEMLVPFGYDYMLKAMWVSALVGGACAFLSAYLMLKGWSLMGDALAHSIVPGVAAAYIIGAPFAVGAFVAGLLA AAGMQFVKLNSRLREDAVIGLVFTTLFALGLLMASIWPASVSVQTIVLGNILAISDADVVQVAVISGVSLGILALLWKDL MVTFFDENHARSIGLNPRALRIVFFTLLSACTVAALQTVGACLVIAMVVTPGATAYLLTDRFGRLILISISIGAITSFVG AYLSYFLDGATGGVIVTLQTLVFLTAFYLAPKHGLLAARGRRLAAAEAGS
Specific function: Part of an ATP-driven transport system yfeABC for chelated iron [H]
COG id: COG1108
COG function: function code P; ABC-type Mn2+/Zn2+ transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-3 integral membrane protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001626 [H]
Pfam domain/function: PF00950 ABC-3 [H]
EC number: NA
Molecular weight: Translated: 30364; Mature: 30232
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADGSLFAEMLVPFGYDYMLKAMWVSALVGGACAFLSAYLMLKGWSLMGDALAHSIVPGV CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH AAAYIIGAPFAVGAFVAGLLAAAGMQFVKLNSRLREDAVIGLVFTTLFALGLLMASIWPA HHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SVSVQTIVLGNILAISDADVVQVAVISGVSLGILALLWKDLMVTFFDENHARSIGLNPRA CCEEHHEEECCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH LRIVFFTLLSACTVAALQTVGACLVIAMVVTPGATAYLLTDRFGRLILISISIGAITSFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCEEEEEEHHHHHHHHH GAYLSYFLDGATGGVIVTLQTLVFLTAFYLAPKHGLLAARGRRLAAAEAGS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCCC >Mature Secondary Structure ADGSLFAEMLVPFGYDYMLKAMWVSALVGGACAFLSAYLMLKGWSLMGDALAHSIVPGV CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH AAAYIIGAPFAVGAFVAGLLAAAGMQFVKLNSRLREDAVIGLVFTTLFALGLLMASIWPA HHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SVSVQTIVLGNILAISDADVVQVAVISGVSLGILALLWKDLMVTFFDENHARSIGLNPRA CCEEHHEEECCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH LRIVFFTLLSACTVAALQTVGACLVIAMVVTPGATAYLLTDRFGRLILISISIGAITSFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCEEEEEEHHHHHHHHH GAYLSYFLDGATGGVIVTLQTLVFLTAFYLAPKHGLLAARGRRLAAAEAGS HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Zn (II) [Periplasm]; H2O; ATP [C]
Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9495751; 11586360; 12142430 [H]