| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is atoS [C]
Identifier: 86750380
GI number: 86750380
Start: 3739436
End: 3741550
Strand: Direct
Name: atoS [C]
Synonym: RPB_3269
Alternate gene names: 86750380
Gene position: 3739436-3741550 (Clockwise)
Preceding gene: 86750367
Following gene: 86750384
Centisome position: 70.14
GC content: 65.86
Gene sequence:
>2115_bases ATGCTGACGGCACAACGCGATTCGCTTCGACTGCTGCGTGCAATTCTGGTCGCCTCGGTCGTGCTACCGGTGGCGCTGTT CACTTACGCGGCCTGGCTGGCCTATCGCGCCAACGACGACGGTGCCGACCGGCAGATCGACAAGACCCGCGACATCATCA CCGAGCACGCGCTGAAGATCTTCGAATCGGTCGAGCGCTCGATCGCGGAGACCGGCGAGATCATCCGTGACATGACGGAC GATCAGATCCGTGCCGGGGAAGGCGCGCTGCACGCGCGGCTGAAGCGGCTGGCCGCCGGCTCGGAACAGATCAAGTCGAT GTGGATCTTCGACAGCAACGGCCAGACGCTGGTCAACACCCTGCTCTATCCCTCGCCACGAACCGACTTCTCCGATCGGG ACTACTTCAAGGCCCATGTCGGAAAGGACATCGGCCTGTTCGTCGGTCGCGCCCTGCAGCCGCGGCCGCCTTATGGCGGA GCTCCGTTCTTCGGCGTCAGCGTGCGGCGCAACATGCCTGACGGGAGCTTCGCCGGGACCATTCAGAGTTCGGTGCTGCC GAACTATTTCGAGGGCTTTTACGCCAAAGTCGGGCGTGAGAACGGCAGCTACGCCGCGCTCGTCCGTGAAGACGGCGCCA TTCTCGCCCGCTTCCCCGCGATCGAGCATGCCGATGCAACGATCAAATCCGACGGTCTGATCGGGCGGGCCATGCGCGCC GGGAGTACCGAAGGCACACTGACACACGTGTCGGCGCTGGACGGCATCGAGCGGCGCATCGCCTATCGCAAGCTGCCGAA CCTGCCGGTCTACGTGTATGCCGGGCTGGAGACCGAGGCGATCCGCAGGATGTGGCTGTCGCAACTCGGCGCCTATCTGC TGGTCGGCCTGCCCGCCACCGCCGCCCTGATCGCGATCGTGGTGCTGGCATTGCGGCGGACGCGGCGGCTCTACGAGGAG GCCGGCCGGCGCGCCGCTGCGGAAAACGCGCTGAAGCAGTCGCAGCGCCTCGAATCGCTGGGGCGCCTCACCGGCGGTGT CGCCCACGATTTCAACAATCTGCTGATGGTGGTCGGCGGCTCGGTGCAGAAGCTGCGGCGGCGGCATCACGATTTGCAGG ACCGCCGGACCTTCGACATGATCGACTCCGCCGTGGCGAAGGGTGCCGGCCTCACCCGCCAATTGCTGTCGTTTTCGCGC CGCCACAACGTCGCGGCCAAGCTGGTCGATCTCGGCGATGCCGTGATGAAATTCGCCGACGTGCTGCGGCAATCCGTCCG CAGCGACATCGCCATCGCGATCGAGCCGCCAACGGAGCCGGTCGTGGTCCAGATCGATCCCAACGAATTCGAGATCGCCC TGCTCAACCTCGCCCTCAACGCACGCGACGCGATGCCGGACGGCGGGCGCATCACGATCTCGATCCGGACCGAGACGCTG AAAAATTTCGGACCACGCCGGCTGACGGGCGACTACGCCATTCTCGGGTTCGCCGACACCGGTATCGGCATTGCCGAGGA GATTCGCGACCGGATCTTCGAGCCGTTCTTCACCACCAAGCCGGTCGATCGCGGCACGGGGCTGGGCCTCAGCCAGATCT ACGGTTTCATCCAGCAATCGAACGGCGCGATCACGGTGGAGAGCACGGTCGGCGGCGGCACCCGCTTCGACCTGTTCCTG CCCCGCTCGACCGAGAGCCCGATACTGGACGCGGATGTCGCGGAGGCCGCCTCGCTCCAGCCGAGCAAACAGGCGACGCT GCTGCTGGTGGAAGATCATCCCGACGTCGCCGCCGTCGCCGCCGACTATGCCGAACAATGCGGCTTCACCGTCGTCACGG TCGGGACCGCCGAAGCCGCGATCGAGCTTCTCAACAAGCGCAAGGACATCGACCTGGTGTTCAGCGACATCGTGATGCCG GGTATGAGCGGCCTCGAGCTCGGTCGGCTGATCCGCGAGCATCATCCCGAAACCCCGGTCGTGCTGGCGTCGGGCTACAG CGACCGCAGCGCATCGGCGCTGAGCGAAGGCTTCCCGCTGCTGCAGAAGCCCTACACGCTCGATGCGCTGCGCAAGGCAC TCGTCCAGGCCCTGCAGGGCGCCGCGGCGAAATGA
Upstream 100 bases:
>100_bases TTTACCGCCTTCCTGATCGGCCGGGCGCAATTGGTTTCCTGCGGCCGGAAAAGGTGCTTAATTGAAAATCAATGGCAGCT GATTTCGCCCACCCAAGCCA
Downstream 100 bases:
>100_bases ACCCTGCCGCCCGGCTCAAATCGCATCGCGAAAGGGCGAGACCCCGGCGCAAGCTGCCGCCGGATCACCGTCGCCGTTGA GCGCGATCCGTGCCCGACGA
Product: periplasmic sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 704; Mature: 704
Protein sequence:
>704_residues MLTAQRDSLRLLRAILVASVVLPVALFTYAAWLAYRANDDGADRQIDKTRDIITEHALKIFESVERSIAETGEIIRDMTD DQIRAGEGALHARLKRLAAGSEQIKSMWIFDSNGQTLVNTLLYPSPRTDFSDRDYFKAHVGKDIGLFVGRALQPRPPYGG APFFGVSVRRNMPDGSFAGTIQSSVLPNYFEGFYAKVGRENGSYAALVREDGAILARFPAIEHADATIKSDGLIGRAMRA GSTEGTLTHVSALDGIERRIAYRKLPNLPVYVYAGLETEAIRRMWLSQLGAYLLVGLPATAALIAIVVLALRRTRRLYEE AGRRAAAENALKQSQRLESLGRLTGGVAHDFNNLLMVVGGSVQKLRRRHHDLQDRRTFDMIDSAVAKGAGLTRQLLSFSR RHNVAAKLVDLGDAVMKFADVLRQSVRSDIAIAIEPPTEPVVVQIDPNEFEIALLNLALNARDAMPDGGRITISIRTETL KNFGPRRLTGDYAILGFADTGIGIAEEIRDRIFEPFFTTKPVDRGTGLGLSQIYGFIQQSNGAITVESTVGGGTRFDLFL PRSTESPILDADVAEAASLQPSKQATLLLVEDHPDVAAVAADYAEQCGFTVVTVGTAEAAIELLNKRKDIDLVFSDIVMP GMSGLELGRLIREHHPETPVVLASGYSDRSASALSEGFPLLQKPYTLDALRKALVQALQGAAAK
Sequences:
>Translated_704_residues MLTAQRDSLRLLRAILVASVVLPVALFTYAAWLAYRANDDGADRQIDKTRDIITEHALKIFESVERSIAETGEIIRDMTD DQIRAGEGALHARLKRLAAGSEQIKSMWIFDSNGQTLVNTLLYPSPRTDFSDRDYFKAHVGKDIGLFVGRALQPRPPYGG APFFGVSVRRNMPDGSFAGTIQSSVLPNYFEGFYAKVGRENGSYAALVREDGAILARFPAIEHADATIKSDGLIGRAMRA GSTEGTLTHVSALDGIERRIAYRKLPNLPVYVYAGLETEAIRRMWLSQLGAYLLVGLPATAALIAIVVLALRRTRRLYEE AGRRAAAENALKQSQRLESLGRLTGGVAHDFNNLLMVVGGSVQKLRRRHHDLQDRRTFDMIDSAVAKGAGLTRQLLSFSR RHNVAAKLVDLGDAVMKFADVLRQSVRSDIAIAIEPPTEPVVVQIDPNEFEIALLNLALNARDAMPDGGRITISIRTETL KNFGPRRLTGDYAILGFADTGIGIAEEIRDRIFEPFFTTKPVDRGTGLGLSQIYGFIQQSNGAITVESTVGGGTRFDLFL PRSTESPILDADVAEAASLQPSKQATLLLVEDHPDVAAVAADYAEQCGFTVVTVGTAEAAIELLNKRKDIDLVFSDIVMP GMSGLELGRLIREHHPETPVVLASGYSDRSASALSEGFPLLQKPYTLDALRKALVQALQGAAAK >Mature_704_residues MLTAQRDSLRLLRAILVASVVLPVALFTYAAWLAYRANDDGADRQIDKTRDIITEHALKIFESVERSIAETGEIIRDMTD DQIRAGEGALHARLKRLAAGSEQIKSMWIFDSNGQTLVNTLLYPSPRTDFSDRDYFKAHVGKDIGLFVGRALQPRPPYGG APFFGVSVRRNMPDGSFAGTIQSSVLPNYFEGFYAKVGRENGSYAALVREDGAILARFPAIEHADATIKSDGLIGRAMRA GSTEGTLTHVSALDGIERRIAYRKLPNLPVYVYAGLETEAIRRMWLSQLGAYLLVGLPATAALIAIVVLALRRTRRLYEE AGRRAAAENALKQSQRLESLGRLTGGVAHDFNNLLMVVGGSVQKLRRRHHDLQDRRTFDMIDSAVAKGAGLTRQLLSFSR RHNVAAKLVDLGDAVMKFADVLRQSVRSDIAIAIEPPTEPVVVQIDPNEFEIALLNLALNARDAMPDGGRITISIRTETL KNFGPRRLTGDYAILGFADTGIGIAEEIRDRIFEPFFTTKPVDRGTGLGLSQIYGFIQQSNGAITVESTVGGGTRFDLFL PRSTESPILDADVAEAASLQPSKQATLLLVEDHPDVAAVAADYAEQCGFTVVTVGTAEAAIELLNKRKDIDLVFSDIVMP GMSGLELGRLIREHHPETPVVLASGYSDRSASALSEGFPLLQKPYTLDALRKALVQALQGAAAK
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=247, Percent_Identity=29.9595141700405, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1790436, Length=277, Percent_Identity=28.5198555956679, Blast_Score=90, Evalue=5e-19, Organism=Escherichia coli, GI1788713, Length=273, Percent_Identity=27.1062271062271, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI48994928, Length=268, Percent_Identity=29.1044776119403, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI87081816, Length=217, Percent_Identity=27.1889400921659, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 76721; Mature: 76721
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTAQRDSLRLLRAILVASVVLPVALFTYAAWLAYRANDDGADRQIDKTRDIITEHALKI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHH FESVERSIAETGEIIRDMTDDQIRAGEGALHARLKRLAAGSEQIKSMWIFDSNGQTLVNT HHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHH LLYPSPRTDFSDRDYFKAHVGKDIGLFVGRALQPRPPYGGAPFFGVSVRRNMPDGSFAGT HCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHH IQSSVLPNYFEGFYAKVGRENGSYAALVREDGAILARFPAIEHADATIKSDGLIGRAMRA HHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHC GSTEGTLTHVSALDGIERRIAYRKLPNLPVYVYAGLETEAIRRMWLSQLGAYLLVGLPAT CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHH AALIAIVVLALRRTRRLYEEAGRRAAAENALKQSQRLESLGRLTGGVAHDFNNLLMVVGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEEECC SVQKLRRRHHDLQDRRTFDMIDSAVAKGAGLTRQLLSFSRRHNVAAKLVDLGDAVMKFAD CHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLRQSVRSDIAIAIEPPTEPVVVQIDPNEFEIALLNLALNARDAMPDGGRITISIRTETL HHHHHHCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEEHHHH KNFGPRRLTGDYAILGFADTGIGIAEEIRDRIFEPFFTTKPVDRGTGLGLSQIYGFIQQS HCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC NGAITVESTVGGGTRFDLFLPRSTESPILDADVAEAASLQPSKQATLLLVEDHPDVAAVA CCCEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHH ADYAEQCGFTVVTVGTAEAAIELLNKRKDIDLVFSDIVMPGMSGLELGRLIREHHPETPV HHHHHHCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCE VLASGYSDRSASALSEGFPLLQKPYTLDALRKALVQALQGAAAK EEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLTAQRDSLRLLRAILVASVVLPVALFTYAAWLAYRANDDGADRQIDKTRDIITEHALKI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHH FESVERSIAETGEIIRDMTDDQIRAGEGALHARLKRLAAGSEQIKSMWIFDSNGQTLVNT HHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHHEEEEECCCCHHHHHH LLYPSPRTDFSDRDYFKAHVGKDIGLFVGRALQPRPPYGGAPFFGVSVRRNMPDGSFAGT HCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHH IQSSVLPNYFEGFYAKVGRENGSYAALVREDGAILARFPAIEHADATIKSDGLIGRAMRA HHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHC GSTEGTLTHVSALDGIERRIAYRKLPNLPVYVYAGLETEAIRRMWLSQLGAYLLVGLPAT CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCHH AALIAIVVLALRRTRRLYEEAGRRAAAENALKQSQRLESLGRLTGGVAHDFNNLLMVVGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEEECC SVQKLRRRHHDLQDRRTFDMIDSAVAKGAGLTRQLLSFSRRHNVAAKLVDLGDAVMKFAD CHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLRQSVRSDIAIAIEPPTEPVVVQIDPNEFEIALLNLALNARDAMPDGGRITISIRTETL HHHHHHCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEEHHHH KNFGPRRLTGDYAILGFADTGIGIAEEIRDRIFEPFFTTKPVDRGTGLGLSQIYGFIQQS HCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC NGAITVESTVGGGTRFDLFLPRSTESPILDADVAEAASLQPSKQATLLLVEDHPDVAAVA CCCEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHH ADYAEQCGFTVVTVGTAEAAIELLNKRKDIDLVFSDIVMPGMSGLELGRLIREHHPETPV HHHHHHCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCE VLASGYSDRSASALSEGFPLLQKPYTLDALRKALVQALQGAAAK EEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA