Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 86750363

GI number: 86750363

Start: 3719225

End: 3719686

Strand: Direct

Name: bkdR [H]

Synonym: RPB_3252

Alternate gene names: 86750363

Gene position: 3719225-3719686 (Clockwise)

Preceding gene: 86750357

Following gene: 86750367

Centisome position: 69.76

GC content: 62.55

Gene sequence:

>462_bases
ATGCCGGATCTCGACGCGATCGATCGCAAGATACTCGCCAGCCTGCAGGCGGACGGCCGCATCACCATGCAGGAACTCGC
CGACAAGGTCGGACTGTCGGTGTCACCCTGTCATCGCCGGGTGAAGCTGCTGGAGAGCCGCGGCGTGATCACGCGCTACA
CCGCGCAGGTCGACCAGAAGGCGATCGGGCTGCATGTCAGCGTGTTCATCTCGATCAAGCTGACGCGGCAGAAGGAGGAA
GACCTCGCCCGCTTCGCGCGGGCGATCTCGAAGTGGGACGAAGTGCTGGAATGCTATCTGATGACCGGCAACCGCGACTA
CCTGCTGCGCGTCGTCGCCGCCGATCTCGCCGCCTATGAATCGTTCCTGAAGACCAAGCTGACGCGGCTCGACGGCATCG
CCTCGATCGAGTCGAGCTTTGCGCTCAGTCAGGTGAAATATTCGATCGCGCTGCCGGTGTAA

Upstream 100 bases:

>100_bases
ACGACGAATCGCAAACCGGGACTTCTCAAATCCCGGCGACAACGCCGGCCGGATTGGGATATCCTGCCAATTCAGACCTC
CAATTGGCGATTTCATTCCA

Downstream 100 bases:

>100_bases
GGCGCACGGTCTCTGCGTCATTGCGAGGAACAAAGCGACGAAGCAATCCAGCGCCGAGCACTAAGCCTCTGGATTGCTTC
GCTTCGCTCGCAATGACGGA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MPDLDAIDRKILASLQADGRITMQELADKVGLSVSPCHRRVKLLESRGVITRYTAQVDQKAIGLHVSVFISIKLTRQKEE
DLARFARAISKWDEVLECYLMTGNRDYLLRVVAADLAAYESFLKTKLTRLDGIASIESSFALSQVKYSIALPV

Sequences:

>Translated_153_residues
MPDLDAIDRKILASLQADGRITMQELADKVGLSVSPCHRRVKLLESRGVITRYTAQVDQKAIGLHVSVFISIKLTRQKEE
DLARFARAISKWDEVLECYLMTGNRDYLLRVVAADLAAYESFLKTKLTRLDGIASIESSFALSQVKYSIALPV
>Mature_152_residues
PDLDAIDRKILASLQADGRITMQELADKVGLSVSPCHRRVKLLESRGVITRYTAQVDQKAIGLHVSVFISIKLTRQKEED
LARFARAISKWDEVLECYLMTGNRDYLLRVVAADLAAYESFLKTKLTRLDGIASIESSFALSQVKYSIALPV

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=39.3333333333333, Blast_Score=121, Evalue=2e-29,
Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=40.2684563758389, Blast_Score=116, Evalue=8e-28,
Organism=Escherichia coli, GI1790182, Length=144, Percent_Identity=31.25, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17129; Mature: 16998

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLDAIDRKILASLQADGRITMQELADKVGLSVSPCHRRVKLLESRGVITRYTAQVDQK
CCCHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
AIGLHVSVFISIKLTRQKEEDLARFARAISKWDEVLECYLMTGNRDYLLRVVAADLAAYE
HHCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SFLKTKLTRLDGIASIESSFALSQVKYSIALPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure 
PDLDAIDRKILASLQADGRITMQELADKVGLSVSPCHRRVKLLESRGVITRYTAQVDQK
CCHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
AIGLHVSVFISIKLTRQKEEDLARFARAISKWDEVLECYLMTGNRDYLLRVVAADLAAYE
HHCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SFLKTKLTRLDGIASIESSFALSQVKYSIALPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]