BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is ygfF [C]

Identifier: 86750353

GI number: 86750353

Start: 3704867

End: 3705619

Strand: Direct

Name: ygfF [C]

Synonym: RPB_3242

Alternate gene names: 86750353

Gene position: 3704867-3705619 (Clockwise)

Preceding gene: 86750351

Following gene: 86750357

Centisome position: 69.49

GC content: 68.53

Gene sequence:

>753_bases
ATGACCAAGACTCTGCAAGGCAAGGTGGCGTTGGTGAGCGGCGCGTCGAAGGGCATCGGCGCCGAGATCGCGCTGCAGCT
CGCCGCCCAAGGCGCCGCCGTCGCCGTCAACTACGCCTCCAGCAAACAGGGCGCCGACGCGGTGGTGGCGCAGATCGCGG
CCGCCGGCGGCAAGGCCGTTGCGGTGCACGGCAATCTCGCCGATCCGACCGCGATCAAGCCGATGATCGATGCCACCGTG
AAGGCACTCGGCCCGATCGACGTGCTGGTGAACAATGCCGGCGTCTACGACATGCTGCCGCTCGACGCGATCACGCCGGA
GCATTTTCACCGCCAGTTCGATCTCAACGTGCTCGGCCTGCTGCTGGTGACGCAGGCGGCCGCCCGGCAGTTCAGCGCGG
CCGGCGGCAGCATCATCAACATCTCCTCCGGCATCTCGACCCTCGCGCCGCCGAATTCCGCGGTCTACACCGCGACCAAG
GCGGCAGTGGATGCGATCACCGCAGTGCTGGCGCGCGAGCTGGCGCCGCGCAAGATCCGCGTCAACGCGGTCAATCCCGG
CATGGTCGTCACCGAAGGCGTCAAGACGGCCGGGTACGACCAGGGCGCGATGCGGCAATGGGTCGAAGCGACGACGCCGC
TCGGCCGCGTCGGCAAGGCCGAAGAAATCGCCGCCGTCGTCACTTTCCTCGCCGGTGAAGGCGCCTCTTACGTCACCGGC
GAAACGCTGCACGTCACCGGCGGCCCGCGCTAG

Upstream 100 bases:

>100_bases
GATATAGGCCGTCCCTTGACATGGTTCAATAGTCCCATACTTCCGAACTATTGAACTAGCCAATCGGGAACCGGCGGTTC
GCAACAAGGGACGATCGACA

Downstream 100 bases:

>100_bases
GCGTGACCCCACTCCCGCGTCAGCTGCACGGCGCAGTGGAGAGCGCCCCCGTTCCACCACAGTTCCTTCACGCTGAATTC
ATCGGCAGGCAACGAAGTTG

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTKTLQGKVALVSGASKGIGAEIALQLAAQGAAVAVNYASSKQGADAVVAQIAAAGGKAVAVHGNLADPTAIKPMIDATV
KALGPIDVLVNNAGVYDMLPLDAITPEHFHRQFDLNVLGLLLVTQAAARQFSAAGGSIINISSGISTLAPPNSAVYTATK
AAVDAITAVLARELAPRKIRVNAVNPGMVVTEGVKTAGYDQGAMRQWVEATTPLGRVGKAEEIAAVVTFLAGEGASYVTG
ETLHVTGGPR

Sequences:

>Translated_250_residues
MTKTLQGKVALVSGASKGIGAEIALQLAAQGAAVAVNYASSKQGADAVVAQIAAAGGKAVAVHGNLADPTAIKPMIDATV
KALGPIDVLVNNAGVYDMLPLDAITPEHFHRQFDLNVLGLLLVTQAAARQFSAAGGSIINISSGISTLAPPNSAVYTATK
AAVDAITAVLARELAPRKIRVNAVNPGMVVTEGVKTAGYDQGAMRQWVEATTPLGRVGKAEEIAAVVTFLAGEGASYVTG
ETLHVTGGPR
>Mature_249_residues
TKTLQGKVALVSGASKGIGAEIALQLAAQGAAVAVNYASSKQGADAVVAQIAAAGGKAVAVHGNLADPTAIKPMIDATVK
ALGPIDVLVNNAGVYDMLPLDAITPEHFHRQFDLNVLGLLLVTQAAARQFSAAGGSIINISSGISTLAPPNSAVYTATKA
AVDAITAVLARELAPRKIRVNAVNPGMVVTEGVKTAGYDQGAMRQWVEATTPLGRVGKAEEIAAVVTFLAGEGASYVTGE
TLHVTGGPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=37.5494071146245, Blast_Score=130, Evalue=8e-31,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=34.5528455284553, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=33.4710743801653, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=32.520325203252, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=32.1705426356589, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=30, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=30.2040816326531, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI59889578, Length=218, Percent_Identity=31.651376146789, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI32455239, Length=181, Percent_Identity=32.0441988950276, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI5031765, Length=181, Percent_Identity=32.0441988950276, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503301, Length=254, Percent_Identity=27.1653543307087, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=31.7460317460317, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI109715829, Length=196, Percent_Identity=32.6530612244898, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI31542939, Length=214, Percent_Identity=29.9065420560748, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI4504505, Length=191, Percent_Identity=31.413612565445, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=29.4736842105263, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=29.7560975609756, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=36.9918699186992, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=38.6178861788618, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=36.2139917695473, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=32.520325203252, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=32.258064516129, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=35.3658536585366, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=31.8548387096774, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=33.8775510204082, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=31.0756972111554, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=28.4552845528455, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787545, Length=254, Percent_Identity=27.9527559055118, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=27.4509803921569, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788891, Length=159, Percent_Identity=32.0754716981132, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=37.4501992031873, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=35.8024691358025, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=29.811320754717, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=33.201581027668, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=31.6793893129771, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=34.2307692307692, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=35.3413654618474, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=35.2941176470588, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.0395256916996, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=32.4324324324324, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=31.0077519379845, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=30.7692307692308, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=31.4606741573034, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=32.1969696969697, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=31.7829457364341, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=30.6201550387597, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=270, Percent_Identity=28.8888888888889, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=30.0380228136882, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=30.7984790874525, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=28.1954887218045, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=28.4615384615385, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=30.9701492537313, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=31.2267657992565, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=249, Percent_Identity=28.1124497991968, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=259, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=25.7028112449799, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=30.3501945525292, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=27.9352226720648, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=205, Percent_Identity=32.6829268292683, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=216, Percent_Identity=31.4814814814815, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=208, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=25.6544502617801, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=28.968253968254, Blast_Score=86, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=249, Percent_Identity=31.7269076305221, Blast_Score=83, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=188, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=38.2470119521912, Blast_Score=154, Evalue=5e-38,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=36.2549800796813, Blast_Score=145, Evalue=4e-35,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=34.1463414634146, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=36.328125, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=36.4, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=33.852140077821, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=32.0158102766798, Blast_Score=111, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=33.6032388663968, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24640492, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=32.5, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=31.1557788944724, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=28.3236994219653, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584752, Length=203, Percent_Identity=31.5270935960591, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007234, Length=206, Percent_Identity=31.5533980582524, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281364892, Length=199, Percent_Identity=29.6482412060301, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24580925, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24649181, Length=211, Percent_Identity=31.2796208530806, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584744, Length=192, Percent_Identity=32.2916666666667, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=32.2916666666667, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357673, Length=200, Percent_Identity=29, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=29.7979797979798, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281364494, Length=205, Percent_Identity=30.2439024390244, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25272; Mature: 25141

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTLQGKVALVSGASKGIGAEIALQLAAQGAAVAVNYASSKQGADAVVAQIAAAGGKAV
CCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEE
AVHGNLADPTAIKPMIDATVKALGPIDVLVNNAGVYDMLPLDAITPEHFHRQFDLNVLGL
EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCHHHHHHCCCHHHHHH
LLVTQAAARQFSAAGGSIINISSGISTLAPPNSAVYTATKAAVDAITAVLARELAPRKIR
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEE
VNAVNPGMVVTEGVKTAGYDQGAMRQWVEATTPLGRVGKAEEIAAVVTFLAGEGASYVTG
EEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECC
ETLHVTGGPR
CEEEECCCCC
>Mature Secondary Structure 
TKTLQGKVALVSGASKGIGAEIALQLAAQGAAVAVNYASSKQGADAVVAQIAAAGGKAV
CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEE
AVHGNLADPTAIKPMIDATVKALGPIDVLVNNAGVYDMLPLDAITPEHFHRQFDLNVLGL
EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCHHHHHHCCCHHHHHH
LLVTQAAARQFSAAGGSIINISSGISTLAPPNSAVYTATKAAVDAITAVLARELAPRKIR
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEE
VNAVNPGMVVTEGVKTAGYDQGAMRQWVEATTPLGRVGKAEEIAAVVTFLAGEGASYVTG
EEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECC
ETLHVTGGPR
CEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]