| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is 86750342
Identifier: 86750342
GI number: 86750342
Start: 3694488
End: 3696200
Strand: Direct
Name: 86750342
Synonym: RPB_3231
Alternate gene names: NA
Gene position: 3694488-3696200 (Clockwise)
Preceding gene: 86750340
Following gene: 86750344
Centisome position: 69.29
GC content: 66.08
Gene sequence:
>1713_bases TTGCCTGTTGCATCGTTGCGGGATCAGGCGCGCTCGCTCGGGCTGCGCACCATCCTCGCCGGATTCGTCGCTTGGGCCGC CGCCGCCGCGATCGCTTTCCGTTCCAGCCTTTTGTCGTCGTTCGATCTGGTGTTCGGCAGCCCCGGCGACGGGCGGCTGA TCGCCTATCTGCACGAGCATCTGTTCAACGCGCTGCGCGGCCGCGCCGAATTCCTCTCACCGCCGTTCTATTTTCCGCAG AAGAACGTGCTCGGTTACACCGACGCGTTCCTGCTCGACATCCTGCCCTATTCGGCGTTGCGCGCGCTGGAACTGGATGC TTTCGTCGCCTCGCAGGTGTTGGCGATCGCGCTGTCGCTGGTCTGCTTCGTCGCCAGCCTGGTGATCCTCGTTCGCTATC TCGGATTGTCGCCCGCGATCGCGATCTGCGCCGCGGTGCTGATCACCTTTCCCAACAATCTGATGGTCAAGACCGCGGAA GCGCATCCGAATTTCTTCGCGCTGTACTACGTCCCCTGCATCGTGCTGCTGGCGCTGTGGGCGATCGAGGATTTCCCGCG GCCGACGAAATGGTCGCTGGTCCGCGCCGGACTGACCGGGCTGCTGTTCGGCCTGTTGTTCTCGACCTTGTTCTACATCG CATGGCTGTTCGTGTTCACCGCGCTGTTCGCCCTGTCCGCCGTCGCCGTGATGCGCGGCCGCGCCATGGTGTCGATGGTC TGGACCAACATCCGGCCCTGCAGCGCGCTGCTCGCAGCCGCGGCGATCGGATTCGCAGTGGGCATCGTCCCGCTGCTGAT GATCTACCTGCCCGCGCTGCACGAATTGTCGGGCCGAACGTTTCGCGAATATCTCAGCTTCGCGCCGTTTCCCAAGGACC TGATCAACGTCAGCCACACCAACCTCGTCTGGGGCTGGCTGGTCGAGCGACTGCTCGGCAAGGTCGACCACGAGCGCGTT CTCGCGGTCACGCCGCTGCTGACGGCGTTCGTGCTGGGGCTTGCCTATGTCGTGCGCAAGGCGCGCCGGCCAGGCCAGGC CGTTCCGTGGCAACTCGTTCTCGGCATCGCCTGCATCGCGGTCTGGGCGCTGTCCTGGCTGCTAACCTTGCGGATCGGCT CGGTCAGCGTGTTCTGGATTCCCTACAAGATCGTGCCTGGCGCCGTGGCGATCCGGGCCGCCGGACGGATCCAGTTGCTG GTGCATCTGTGGTTGGTCGTCGGACTGGCCGTGCTGCTGCAACACTGGATCACGACCGCGCCGCTCGGCCGGCTGCGCGC GCGACAGGCGATCGCGGGGCTGCTGCTGGCGGTGTGCCTGGTCGAACAGATCAATCTGCAGCCCGGCGAGTTGTCACGTC GCGATGAATTCGCGCGGCTCGACGCGGTGCCGGCGCCGCCGGCGGACTGCGAAGTGTTCGTGGTGAATGCCGGACCGCCG TCCGACATCTCGCTCAAGGAAGTCGACGCGATGTGGATCTCGATGCGGCTCGGATTGCCGACCATCAACGGCAATTCCGG CTGGTCGCCGCCGGGCTGGCGGCTCGACGACATCAAGATGGACTACGACGACGCGCTGCGGCGCTGGATCAAGCAGGCCG GCGTGACGCAGCGAATCTGCCAGTATCAGCGCGACACGCAGGTCTGGTCGGCCTACGACCCGACCCCGCCGGCGTTGCGG CCCACGGCGGACGCCGCCCCGCGGGCCGACTGA
Upstream 100 bases:
>100_bases CAATGATACCGTCACTGTGCAGCCAACGAGCTGAGTGTCGCGACCAAGTGGACTTCCCCTGCGCAATCGATCAGCCGTCA CGCGATACACGGAGATCGGA
Downstream 100 bases:
>100_bases GCGAGTGCCTCCGCCGCTCGAAGTCGCCGGTTCAATGCAGCCGGAACACGCCGTCGACGGCGCGCAGTTCGGCGGGCTTG ATCAGCTTCGAATGCGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 570; Mature: 569
Protein sequence:
>570_residues MPVASLRDQARSLGLRTILAGFVAWAAAAAIAFRSSLLSSFDLVFGSPGDGRLIAYLHEHLFNALRGRAEFLSPPFYFPQ KNVLGYTDAFLLDILPYSALRALELDAFVASQVLAIALSLVCFVASLVILVRYLGLSPAIAICAAVLITFPNNLMVKTAE AHPNFFALYYVPCIVLLALWAIEDFPRPTKWSLVRAGLTGLLFGLLFSTLFYIAWLFVFTALFALSAVAVMRGRAMVSMV WTNIRPCSALLAAAAIGFAVGIVPLLMIYLPALHELSGRTFREYLSFAPFPKDLINVSHTNLVWGWLVERLLGKVDHERV LAVTPLLTAFVLGLAYVVRKARRPGQAVPWQLVLGIACIAVWALSWLLTLRIGSVSVFWIPYKIVPGAVAIRAAGRIQLL VHLWLVVGLAVLLQHWITTAPLGRLRARQAIAGLLLAVCLVEQINLQPGELSRRDEFARLDAVPAPPADCEVFVVNAGPP SDISLKEVDAMWISMRLGLPTINGNSGWSPPGWRLDDIKMDYDDALRRWIKQAGVTQRICQYQRDTQVWSAYDPTPPALR PTADAAPRAD
Sequences:
>Translated_570_residues MPVASLRDQARSLGLRTILAGFVAWAAAAAIAFRSSLLSSFDLVFGSPGDGRLIAYLHEHLFNALRGRAEFLSPPFYFPQ KNVLGYTDAFLLDILPYSALRALELDAFVASQVLAIALSLVCFVASLVILVRYLGLSPAIAICAAVLITFPNNLMVKTAE AHPNFFALYYVPCIVLLALWAIEDFPRPTKWSLVRAGLTGLLFGLLFSTLFYIAWLFVFTALFALSAVAVMRGRAMVSMV WTNIRPCSALLAAAAIGFAVGIVPLLMIYLPALHELSGRTFREYLSFAPFPKDLINVSHTNLVWGWLVERLLGKVDHERV LAVTPLLTAFVLGLAYVVRKARRPGQAVPWQLVLGIACIAVWALSWLLTLRIGSVSVFWIPYKIVPGAVAIRAAGRIQLL VHLWLVVGLAVLLQHWITTAPLGRLRARQAIAGLLLAVCLVEQINLQPGELSRRDEFARLDAVPAPPADCEVFVVNAGPP SDISLKEVDAMWISMRLGLPTINGNSGWSPPGWRLDDIKMDYDDALRRWIKQAGVTQRICQYQRDTQVWSAYDPTPPALR PTADAAPRAD >Mature_569_residues PVASLRDQARSLGLRTILAGFVAWAAAAAIAFRSSLLSSFDLVFGSPGDGRLIAYLHEHLFNALRGRAEFLSPPFYFPQK NVLGYTDAFLLDILPYSALRALELDAFVASQVLAIALSLVCFVASLVILVRYLGLSPAIAICAAVLITFPNNLMVKTAEA HPNFFALYYVPCIVLLALWAIEDFPRPTKWSLVRAGLTGLLFGLLFSTLFYIAWLFVFTALFALSAVAVMRGRAMVSMVW TNIRPCSALLAAAAIGFAVGIVPLLMIYLPALHELSGRTFREYLSFAPFPKDLINVSHTNLVWGWLVERLLGKVDHERVL AVTPLLTAFVLGLAYVVRKARRPGQAVPWQLVLGIACIAVWALSWLLTLRIGSVSVFWIPYKIVPGAVAIRAAGRIQLLV HLWLVVGLAVLLQHWITTAPLGRLRARQAIAGLLLAVCLVEQINLQPGELSRRDEFARLDAVPAPPADCEVFVVNAGPPS DISLKEVDAMWISMRLGLPTINGNSGWSPPGWRLDDIKMDYDDALRRWIKQAGVTQRICQYQRDTQVWSAYDPTPPALRP TADAAPRAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62672; Mature: 62541
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVASLRDQARSLGLRTILAGFVAWAAAAAIAFRSSLLSSFDLVFGSPGDGRLIAYLHEH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH LFNALRGRAEFLSPPFYFPQKNVLGYTDAFLLDILPYSALRALELDAFVASQVLAIALSL HHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VCFVASLVILVRYLGLSPAIAICAAVLITFPNNLMVKTAEAHPNFFALYYVPCIVLLALW HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHHHHHHHHHH AIEDFPRPTKWSLVRAGLTGLLFGLLFSTLFYIAWLFVFTALFALSAVAVMRGRAMVSMV HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WTNIRPCSALLAAAAIGFAVGIVPLLMIYLPALHELSGRTFREYLSFAPFPKDLINVSHT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHCCCCH NLVWGWLVERLLGKVDHERVLAVTPLLTAFVLGLAYVVRKARRPGQAVPWQLVLGIACIA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH VWALSWLLTLRIGSVSVFWIPYKIVPGAVAIRAAGRIQLLVHLWLVVGLAVLLQHWITTA HHHHHHHHHHHHCCEEEEEEEHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC PLGRLRARQAIAGLLLAVCLVEQINLQPGELSRRDEFARLDAVPAPPADCEVFVVNAGPP CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCC SDISLKEVDAMWISMRLGLPTINGNSGWSPPGWRLDDIKMDYDDALRRWIKQAGVTQRIC CCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH QYQRDTQVWSAYDPTPPALRPTADAAPRAD HHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PVASLRDQARSLGLRTILAGFVAWAAAAAIAFRSSLLSSFDLVFGSPGDGRLIAYLHEH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH LFNALRGRAEFLSPPFYFPQKNVLGYTDAFLLDILPYSALRALELDAFVASQVLAIALSL HHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VCFVASLVILVRYLGLSPAIAICAAVLITFPNNLMVKTAEAHPNFFALYYVPCIVLLALW HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHHHHHHHHHHHH AIEDFPRPTKWSLVRAGLTGLLFGLLFSTLFYIAWLFVFTALFALSAVAVMRGRAMVSMV HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WTNIRPCSALLAAAAIGFAVGIVPLLMIYLPALHELSGRTFREYLSFAPFPKDLINVSHT HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHCCCCH NLVWGWLVERLLGKVDHERVLAVTPLLTAFVLGLAYVVRKARRPGQAVPWQLVLGIACIA HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH VWALSWLLTLRIGSVSVFWIPYKIVPGAVAIRAAGRIQLLVHLWLVVGLAVLLQHWITTA HHHHHHHHHHHHCCEEEEEEEHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC PLGRLRARQAIAGLLLAVCLVEQINLQPGELSRRDEFARLDAVPAPPADCEVFVVNAGPP CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCC SDISLKEVDAMWISMRLGLPTINGNSGWSPPGWRLDDIKMDYDDALRRWIKQAGVTQRIC CCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHH QYQRDTQVWSAYDPTPPALRPTADAAPRAD HHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA