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The map label for this gene is ybfB [H]

Identifier: 86750116

GI number: 86750116

Start: 3413803

End: 3415029

Strand: Direct

Name: ybfB [H]

Synonym: RPB_2999

Alternate gene names: 86750116

Gene position: 3413803-3415029 (Clockwise)

Preceding gene: 86750115

Following gene: 86750117

Centisome position: 64.03

GC content: 69.68

Gene sequence:

>1227_bases
TTGGACCAGCGCGCATCGCAGCGGACCGGCCTCGTCGTGCTCGGCGTGTGCTTCGTGCTGTCGCTGCTCGGCCGCGGCCT
GGGCGAGAGCTTCACCGTCTTCCTGCTGCCGATCTCGCAATCGTTCGGCTGGGACCGCGCCGAGGTGGTGTCGATCTATT
CGCTGACTGCGCTGTGCAGCGGCATCGCCTCGCCCTTCGTCGGCCGTCTGTTCGACCGCTCCGGCCCGCGCCTCGTCTAT
ATGCTCGGACTGCTGCTGCTCGGCGGCGCCTTCCTCGGTGCGGCCATCGCGCAGCAGCTCTGGCAATTGCAGCTCGCCGT
CGGCCTCTGCGTCGGGCTCGGCATCGCCTTCACCGGCACCGTGCCGAACTCGATCCTGCTCGGCCGCTGGTTCGGACCGC
GGCTGCCAACCGCGATGGCCGTGGTGTATTCCGCGACCGGCGCCGGCGTGCTGCTGCTGCTGCCGATCGCCCAGCTGCTG
ATCGAGCGTTCCGGCTGGCGCGGCGCCTACGAGTTGCTGGGCGCGGCGATGCTGCTGCTGCTGGTGCCGCTGCTGATGCT
GCCGTGGCGGCGCTATGCCCAGGGTGCGCCGGGCGGCATCGCGGCGCACGCCGCCTCGCTCGACGCACCCGACGACGGCT
GGACGCTGCGCGCGGCGATGCGGCACCACGCGTTCTGGGCGCTGTTCGCGACGTTCTTCTTCACCGCGATCGGGATGTAC
GCGATCGCAGCCCAAGTCGTCGCCTATCTGATCGACGCCGGCTTTCCGCCGCTGCAGGCGGCGACCGCCTGGGGCTTCTC
CGGCGTGGTGCTGGTGATCGGCATGCTCGGCGTGAGCTGGCTCGACGGCGTGATCGGCCGCCGGCCCTCGATCCTTTTCT
CCTATGCGGTCTCGATCGCCGGCATCGTGATGCTGTGGCTGCTGAAATCCTATCCCGACTACGTCCTGCTGACCGGCTTC
GTCGTCTGCTTCGGCAGCATGATCGGCTCGCGCGGCCCGCTGATCACCGCGACCGCGATGAAGCTGTTTCGCGGCCGGCA
CGTCGGCCTGATCTACGGCACGATCGCGATCGGCAGCGGGCTCGGCTCGGCGTTCGGCTCCTGGTGCGGCGGCCTGATCC
ACGACCTCAGCGGCAGCTACGACCCGGTGATCGGCTTCGCGCTGGTCGCCGTGCTGCTCGGGATGATTCCGTTTCTGGTG
GTGCCGGCGCTGCGCGAGCGGTCCTGA

Upstream 100 bases:

>100_bases
ACGTCCTGCTCAGGCTCGCATAGCCCCATTCGCCGGCGGCGCTGTTCATTCCGGCGGAAACGCGCTCCATGGAGCCAACG
TTTTCGGGAAGGACCGCACC

Downstream 100 bases:

>100_bases
TCCGAGCACCTGCAATATATTCGCAAAAACGCATGTTATCGCCGGCGGATTGCGGCAATGCGACGCCGCCAATCAGAAAA
TCGTGTACGGCGATTTGCGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MDQRASQRTGLVVLGVCFVLSLLGRGLGESFTVFLLPISQSFGWDRAEVVSIYSLTALCSGIASPFVGRLFDRSGPRLVY
MLGLLLLGGAFLGAAIAQQLWQLQLAVGLCVGLGIAFTGTVPNSILLGRWFGPRLPTAMAVVYSATGAGVLLLLPIAQLL
IERSGWRGAYELLGAAMLLLLVPLLMLPWRRYAQGAPGGIAAHAASLDAPDDGWTLRAAMRHHAFWALFATFFFTAIGMY
AIAAQVVAYLIDAGFPPLQAATAWGFSGVVLVIGMLGVSWLDGVIGRRPSILFSYAVSIAGIVMLWLLKSYPDYVLLTGF
VVCFGSMIGSRGPLITATAMKLFRGRHVGLIYGTIAIGSGLGSAFGSWCGGLIHDLSGSYDPVIGFALVAVLLGMIPFLV
VPALRERS

Sequences:

>Translated_408_residues
MDQRASQRTGLVVLGVCFVLSLLGRGLGESFTVFLLPISQSFGWDRAEVVSIYSLTALCSGIASPFVGRLFDRSGPRLVY
MLGLLLLGGAFLGAAIAQQLWQLQLAVGLCVGLGIAFTGTVPNSILLGRWFGPRLPTAMAVVYSATGAGVLLLLPIAQLL
IERSGWRGAYELLGAAMLLLLVPLLMLPWRRYAQGAPGGIAAHAASLDAPDDGWTLRAAMRHHAFWALFATFFFTAIGMY
AIAAQVVAYLIDAGFPPLQAATAWGFSGVVLVIGMLGVSWLDGVIGRRPSILFSYAVSIAGIVMLWLLKSYPDYVLLTGF
VVCFGSMIGSRGPLITATAMKLFRGRHVGLIYGTIAIGSGLGSAFGSWCGGLIHDLSGSYDPVIGFALVAVLLGMIPFLV
VPALRERS
>Mature_408_residues
MDQRASQRTGLVVLGVCFVLSLLGRGLGESFTVFLLPISQSFGWDRAEVVSIYSLTALCSGIASPFVGRLFDRSGPRLVY
MLGLLLLGGAFLGAAIAQQLWQLQLAVGLCVGLGIAFTGTVPNSILLGRWFGPRLPTAMAVVYSATGAGVLLLLPIAQLL
IERSGWRGAYELLGAAMLLLLVPLLMLPWRRYAQGAPGGIAAHAASLDAPDDGWTLRAAMRHHAFWALFATFFFTAIGMY
AIAAQVVAYLIDAGFPPLQAATAWGFSGVVLVIGMLGVSWLDGVIGRRPSILFSYAVSIAGIVMLWLLKSYPDYVLLTGF
VVCFGSMIGSRGPLITATAMKLFRGRHVGLIYGTIAIGSGLGSAFGSWCGGLIHDLSGSYDPVIGFALVAVLLGMIPFLV
VPALRERS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Homo sapiens, GI291621700, Length=424, Percent_Identity=24.2924528301887, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI114796626, Length=351, Percent_Identity=30.1994301994302, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI292781289, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI40789261, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI24431958, Length=389, Percent_Identity=23.3933161953728, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43217; Mature: 43217

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQRASQRTGLVVLGVCFVLSLLGRGLGESFTVFLLPISQSFGWDRAEVVSIYSLTALCS
CCCCCHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
GIASPFVGRLFDRSGPRLVYMLGLLLLGGAFLGAAIAQQLWQLQLAVGLCVGLGIAFTGT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
VPNSILLGRWFGPRLPTAMAVVYSATGAGVLLLLPIAQLLIERSGWRGAYELLGAAMLLL
CCCCCEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LVPLLMLPWRRYAQGAPGGIAAHAASLDAPDDGWTLRAAMRHHAFWALFATFFFTAIGMY
HHHHHHHCHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAAQVVAYLIDAGFPPLQAATAWGFSGVVLVIGMLGVSWLDGVIGRRPSILFSYAVSIA
HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GIVMLWLLKSYPDYVLLTGFVVCFGSMIGSRGPLITATAMKLFRGRHVGLIYGTIAIGSG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHCC
LGSAFGSWCGGLIHDLSGSYDPVIGFALVAVLLGMIPFLVVPALRERS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDQRASQRTGLVVLGVCFVLSLLGRGLGESFTVFLLPISQSFGWDRAEVVSIYSLTALCS
CCCCCHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
GIASPFVGRLFDRSGPRLVYMLGLLLLGGAFLGAAIAQQLWQLQLAVGLCVGLGIAFTGT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
VPNSILLGRWFGPRLPTAMAVVYSATGAGVLLLLPIAQLLIERSGWRGAYELLGAAMLLL
CCCCCEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LVPLLMLPWRRYAQGAPGGIAAHAASLDAPDDGWTLRAAMRHHAFWALFATFFFTAIGMY
HHHHHHHCHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAAQVVAYLIDAGFPPLQAATAWGFSGVVLVIGMLGVSWLDGVIGRRPSILFSYAVSIA
HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GIVMLWLLKSYPDYVLLTGFVVCFGSMIGSRGPLITATAMKLFRGRHVGLIYGTIAIGSG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEHHHHHCC
LGSAFGSWCGGLIHDLSGSYDPVIGFALVAVLLGMIPFLVVPALRERS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]