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The map label for this gene is rhaS [C]

Identifier: 86750101

GI number: 86750101

Start: 3397938

End: 3398948

Strand: Direct

Name: rhaS [C]

Synonym: RPB_2984

Alternate gene names: 86750101

Gene position: 3397938-3398948 (Clockwise)

Preceding gene: 86750098

Following gene: 86750102

Centisome position: 63.73

GC content: 64.39

Gene sequence:

>1011_bases
ATGCCACCGCCGTCCGACGCTCATTCGACCTGCCAGACACCTCCCACCGAGCTACTGAAGGACTTCGCGATCCTTCGCAC
CAATGATCCGGACACCGCGCGCAAGCTGGTCTGGAGTCGGTTCGGCCTCAATCTATCGACGCCGAGGATTGAAGGATTCT
TCTCCCGGGCCAACATCGCGGAACTGCCAAATGTTTCGCTATATTTCTGCGCCAACTCCACGCCCGTCGCGCTGCAGATC
CCGAACAGCAAGGGCGCTCATGTGCACCTGTGCCTGCGCGGCCGCGGCACGCTGATACATGACCGCCGCCGCATCGAGAT
CGGCGAAGGCGAGGCGTTCGTCTGTTCGCCCGGCAAGCCTGCTTTGCTCGATTTCGCCGCAGGCTATGAGGAACTGGCGC
TGCACGTCCCGGTGCCGATGCTGGAGCGAACCTTCGCCGCGCTGACCGGGTTGGGGCCGCACACGACGATCGCGTTCGAG
CCCGAGATCATCACCGACGATCCGCACTATGCAGGCTTCCGCGATCTCGTGCTGCTGCTCGCCGGAAGCCTCGATGCCGC
ATTCTCCGCCTGGCCAAAGGCGACGATCGCGCAACTCGAGCTGGCCTGCGTGTCGCAACTTCTGTACTGCACATCGCACA
ATCTCCGTCGCGTGCTCTGTCCGGAAGATTTCGGCGCGGTGCCCAGCCTGGTCCGCATCGCCGAGCATTATATCGAGAGC
CGCTGCGAGTCCGACGCCAGCGTCGACGATATTGCGCGAGCGTGCGCCGTCAGCGTCTCGACTCTGACCCGGATGTTTAT
GAAGTACCGCGGCTACTCGCCCGCCGCTTTCATCAAGCGCGCCAAACTGGCGCGCGCCAGACAGTTACTCGAATCCCGCG
CAGCCAGCACGGTGGTCGGCGTCGCGCTGCGCTGCGGCTTCGCCAATCCGAGCCGCTTCGCCAAGGACTATCGCGAGGCG
TTCGGGGAGTCGCCGACCGAGACGCTGCGGCGACGGCGACCGCAAGACTGA

Upstream 100 bases:

>100_bases
TTCGGTCAGAATGGACAAACGGCACGACCTGATTGACATAGCTCAAGCCGACGACGACGCTGGCGCCGAACTAACAGGCA
TCCGTCGATCGCTGTACGCA

Downstream 100 bases:

>100_bases
CGATCGACGGCTTCGATCCGCTGATCGCCTCCGTCTTGCGCATCACCCGCGACCGCGCTCCGTCGCCGGAGTCGGCTTCC
CCCGGCCGCGCTGCTCAAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MPPPSDAHSTCQTPPTELLKDFAILRTNDPDTARKLVWSRFGLNLSTPRIEGFFSRANIAELPNVSLYFCANSTPVALQI
PNSKGAHVHLCLRGRGTLIHDRRRIEIGEGEAFVCSPGKPALLDFAAGYEELALHVPVPMLERTFAALTGLGPHTTIAFE
PEIITDDPHYAGFRDLVLLLAGSLDAAFSAWPKATIAQLELACVSQLLYCTSHNLRRVLCPEDFGAVPSLVRIAEHYIES
RCESDASVDDIARACAVSVSTLTRMFMKYRGYSPAAFIKRAKLARARQLLESRAASTVVGVALRCGFANPSRFAKDYREA
FGESPTETLRRRRPQD

Sequences:

>Translated_336_residues
MPPPSDAHSTCQTPPTELLKDFAILRTNDPDTARKLVWSRFGLNLSTPRIEGFFSRANIAELPNVSLYFCANSTPVALQI
PNSKGAHVHLCLRGRGTLIHDRRRIEIGEGEAFVCSPGKPALLDFAAGYEELALHVPVPMLERTFAALTGLGPHTTIAFE
PEIITDDPHYAGFRDLVLLLAGSLDAAFSAWPKATIAQLELACVSQLLYCTSHNLRRVLCPEDFGAVPSLVRIAEHYIES
RCESDASVDDIARACAVSVSTLTRMFMKYRGYSPAAFIKRAKLARARQLLESRAASTVVGVALRCGFANPSRFAKDYREA
FGESPTETLRRRRPQD
>Mature_335_residues
PPPSDAHSTCQTPPTELLKDFAILRTNDPDTARKLVWSRFGLNLSTPRIEGFFSRANIAELPNVSLYFCANSTPVALQIP
NSKGAHVHLCLRGRGTLIHDRRRIEIGEGEAFVCSPGKPALLDFAAGYEELALHVPVPMLERTFAALTGLGPHTTIAFEP
EIITDDPHYAGFRDLVLLLAGSLDAAFSAWPKATIAQLELACVSQLLYCTSHNLRRVLCPEDFGAVPSLVRIAEHYIESR
CESDASVDDIARACAVSVSTLTRMFMKYRGYSPAAFIKRAKLARARQLLESRAASTVVGVALRCGFANPSRFAKDYREAF
GESPTETLRRRRPQD

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36986; Mature: 36855

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPPSDAHSTCQTPPTELLKDFAILRTNDPDTARKLVWSRFGLNLSTPRIEGFFSRANIA
CCCCCCCCCCCCCCHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH
ELPNVSLYFCANSTPVALQIPNSKGAHVHLCLRGRGTLIHDRRRIEIGEGEAFVCSPGKP
HCCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCEEECCEEEEECCCCEEEECCCCC
ALLDFAAGYEELALHVPVPMLERTFAALTGLGPHTTIAFEPEIITDDPHYAGFRDLVLLL
HHHHHHCCHHHHEEECCHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCCCCHHHHHHHH
AGSLDAAFSAWPKATIAQLELACVSQLLYCTSHNLRRVLCPEDFGAVPSLVRIAEHYIES
HCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
RCESDASVDDIARACAVSVSTLTRMFMKYRGYSPAAFIKRAKLARARQLLESRAASTVVG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALRCGFANPSRFAKDYREAFGESPTETLRRRRPQD
HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC
>Mature Secondary Structure 
PPPSDAHSTCQTPPTELLKDFAILRTNDPDTARKLVWSRFGLNLSTPRIEGFFSRANIA
CCCCCCCCCCCCCHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCHH
ELPNVSLYFCANSTPVALQIPNSKGAHVHLCLRGRGTLIHDRRRIEIGEGEAFVCSPGKP
HCCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCEEECCEEEEECCCCEEEECCCCC
ALLDFAAGYEELALHVPVPMLERTFAALTGLGPHTTIAFEPEIITDDPHYAGFRDLVLLL
HHHHHHCCHHHHEEECCHHHHHHHHHHHHCCCCCCEEEECCEEECCCCCCCCHHHHHHHH
AGSLDAAFSAWPKATIAQLELACVSQLLYCTSHNLRRVLCPEDFGAVPSLVRIAEHYIES
HCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH
RCESDASVDDIARACAVSVSTLTRMFMKYRGYSPAAFIKRAKLARARQLLESRAASTVVG
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALRCGFANPSRFAKDYREAFGESPTETLRRRRPQD
HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]