Definition | Rhodopseudomonas palustris HaA2, complete genome. |
---|---|
Accession | NC_007778 |
Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is sam [H]
Identifier: 86749983
GI number: 86749983
Start: 3265354
End: 3266235
Strand: Direct
Name: sam [H]
Synonym: RPB_2866
Alternate gene names: 86749983
Gene position: 3265354-3266235 (Clockwise)
Preceding gene: 86749980
Following gene: 86749985
Centisome position: 61.24
GC content: 65.65
Gene sequence:
>882_bases ATGACCCGCCCCCCTTCGAAGAGCATGGCCGCGCTGTGGATGTCCGGCTGGCTCAGCCTGATGCTGATCATCGCGGTCGC CGGTCGCGAGACGTTGCGCGAGCTGAACGTGTTCCAGGTCATGGAACTGCGATCGGTGATCGGCTTTGCGATGCTGTATC CGCTGGTGCACGCCGCCGGCGGCTTTGCCACCATGGCGACGGCGCGACCGCTGCCGCACCTCGCCCGCAATCTGGTGCAC TATGCGGCGCAGCTCGGCTGGTTCTTCGCGCTGACGCTGATCCCGATCGGCCAGGTCGTCGCGATCGAGTTCACCATGCC GATCTGGATCGCGATCCTTGCGGCGACCTTTCTGGGCGAACGCCTGAACGTCTGGAGAGTCGCGGCGGTCGCATTGGGAC TCCTCGGCGTCATCGTGATCGTCCGCCCTGCCACCGGGACGATCGATCCCGGCCAGCTGATCGCGCTCGGCGCCGCCTTC GGCTTCGCTGTGACGATCACGCTGGTCAAGGCGCTGACGCGGACCGAGAGCACGCTGACGATCATCTTCTGGATGCTGAT CATCCAGTCGGCGCTCGGCTTCTTCCCGGCGCTGTATGTCTGGCAGTGGCCGTCGAATTACGCCTGGATCTGGATCGTGG TGATCGCGTTCTGCGGCACGTTCTCGCACTACTGCATGGCGCGGGCGCTGTCCTATGCCGACGCCACGGTGGTGGTGCCG ATGGACTTCCTGCGCGTGCCACTCAGCGCAACCGCCGGTTGGCTGCTCTACGGCGAACGGCTCGATGCCTACACCGTGCT CGGTGCGGTGCTGATTCTCGCCGGAAACCTGCTCAACCTGCGCACCGCCCGATCGGCCACCGTCGCACCCAGCAAGACGT GA
Upstream 100 bases:
>100_bases AACCACGCCGATCTGCATTCGCGCGGGTTGCCAATCCCGGCACGGTCGCCGATAGAGCAAGCGGAAACGCCTGGCGACAG AACAGCAGAACAATCCGCCG
Downstream 100 bases:
>100_bases GACGGCCCCACAGCGCTCGACAGGCCCCTACAGCCCCGCGGCCTTGCGCAGCGCGGCGTTGATGCGCTCCTGCCAGCCGG GACCATCGCCCTGGAAGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTRPPSKSMAALWMSGWLSLMLIIAVAGRETLRELNVFQVMELRSVIGFAMLYPLVHAAGGFATMATARPLPHLARNLVH YAAQLGWFFALTLIPIGQVVAIEFTMPIWIAILAATFLGERLNVWRVAAVALGLLGVIVIVRPATGTIDPGQLIALGAAF GFAVTITLVKALTRTESTLTIIFWMLIIQSALGFFPALYVWQWPSNYAWIWIVVIAFCGTFSHYCMARALSYADATVVVP MDFLRVPLSATAGWLLYGERLDAYTVLGAVLILAGNLLNLRTARSATVAPSKT
Sequences:
>Translated_293_residues MTRPPSKSMAALWMSGWLSLMLIIAVAGRETLRELNVFQVMELRSVIGFAMLYPLVHAAGGFATMATARPLPHLARNLVH YAAQLGWFFALTLIPIGQVVAIEFTMPIWIAILAATFLGERLNVWRVAAVALGLLGVIVIVRPATGTIDPGQLIALGAAF GFAVTITLVKALTRTESTLTIIFWMLIIQSALGFFPALYVWQWPSNYAWIWIVVIAFCGTFSHYCMARALSYADATVVVP MDFLRVPLSATAGWLLYGERLDAYTVLGAVLILAGNLLNLRTARSATVAPSKT >Mature_292_residues TRPPSKSMAALWMSGWLSLMLIIAVAGRETLRELNVFQVMELRSVIGFAMLYPLVHAAGGFATMATARPLPHLARNLVHY AAQLGWFFALTLIPIGQVVAIEFTMPIWIAILAATFLGERLNVWRVAAVALGLLGVIVIVRPATGTIDPGQLIALGAAFG FAVTITLVKALTRTESTLTIIFWMLIIQSALGFFPALYVWQWPSNYAWIWIVVIAFCGTFSHYCMARALSYADATVVVPM DFLRVPLSATAGWLLYGERLDAYTVLGAVLILAGNLLNLRTARSATVAPSKT
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31943; Mature: 31811
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPPSKSMAALWMSGWLSLMLIIAVAGRETLRELNVFQVMELRSVIGFAMLYPLVHAAG CCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFATMATARPLPHLARNLVHYAAQLGWFFALTLIPIGQVVAIEFTMPIWIAILAATFLGE CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH RLNVWRVAAVALGLLGVIVIVRPATGTIDPGQLIALGAAFGFAVTITLVKALTRTESTLT HHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH IIFWMLIIQSALGFFPALYVWQWPSNYAWIWIVVIAFCGTFSHYCMARALSYADATVVVP HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE MDFLRVPLSATAGWLLYGERLDAYTVLGAVLILAGNLLNLRTARSATVAPSKT HHHHHCCHHHCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure TRPPSKSMAALWMSGWLSLMLIIAVAGRETLRELNVFQVMELRSVIGFAMLYPLVHAAG CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFATMATARPLPHLARNLVHYAAQLGWFFALTLIPIGQVVAIEFTMPIWIAILAATFLGE CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH RLNVWRVAAVALGLLGVIVIVRPATGTIDPGQLIALGAAFGFAVTITLVKALTRTESTLT HHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH IIFWMLIIQSALGFFPALYVWQWPSNYAWIWIVVIAFCGTFSHYCMARALSYADATVVVP HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE MDFLRVPLSATAGWLLYGERLDAYTVLGAVLILAGNLLNLRTARSATVAPSKT HHHHHCCHHHCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA