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The map label for this gene is ydiD [C]

Identifier: 86749965

GI number: 86749965

Start: 3242394

End: 3243911

Strand: Direct

Name: ydiD [C]

Synonym: RPB_2848

Alternate gene names: 86749965

Gene position: 3242394-3243911 (Clockwise)

Preceding gene: 86749964

Following gene: 86749966

Centisome position: 60.81

GC content: 70.95

Gene sequence:

>1518_bases
GTGAGCCAGCCCAACGCATCGCCGACGCTCGACGGTCTGTTCCGCCGGATCCTGGCGCGCCAGCCCGATGCGGTCGCCCT
GATCGACCCCGCCGACAAAGCGCGCATCACCGGACAGGCCCCCGCCCGCCTCACCTACGCGCAGGCCGACAAGGCGATCT
CGGCGCTGGCCGCGCACTTCACCGCCGCCGGGCTGCCGGCGAATTCGGTGATCGCGCTGCAACTGCCGAACACGATCGAG
TTTCCGTTGGCGCTTCTGGCCGCGCACCGCGCCGGCCTGGTCGTCGCGCTGCTGCCGCAGCTCTGGCGGCAGGCCGACAT
CACCACGGCGCTGAACCGCACCGGGGCGCGTGCCATCGTCTCGACCCGCTGGATCGACGGCGTCAGCCACGCCGATCTGG
CGATGAACGCCGCGGCCGAGGCGTTCTCGATCCGCTACGTCGGCGGCTTCGGCGACGATCTGCCGGAGGGCATGGCGTCG
CTCGACGTCGCCATGACCGACGACGTTTCGGCAACCATGCCGGCGGCCCAGGACGCGCGCCGCGCCGCGATCATTTCGTT
CGACACCACGCCGGACGGCGTCCGGGCGATCCCGCGCACCCATCTGCACATGATCGCCGGCGGACTCGCGGTGTTCCTCG
AAGGCCGGGTGCCGCAAGGCGCGATGCTGCTGTCGGCGCAGGCCCCGTCCTCTTTCGCCGGGCTCGCCTCGTCGATCGTG
ACATGGCTTCTAAGCGGCGGCACGCTGGCCCTGCACCATCCGTTCGACGAAGCGGTGTTGGAATCCCAGATCCGCGATCT
CGGCTGCGACACGCTGGTGGCGCCGGCGCCGCTGGCGTTGCGGCTGGGCGAAACCGGCCTCGCCGGAATGCCGACGCTGC
GCAACGTCATCGGCCTCTGGCGCGCGCCGGAACAGGTGGCCGCGAGTTCCGCCTGGACCGCTGTCCCTGCGACCTTCACG
GACGTGTATCTGTTCGGCGAGGCAGGCCTGTTCGGCGCGCAGCGCGCCGAGACTGGCACGCCGGCCGCGATCATGCCGGG
ACCGCACACCGCCTCCCGCGGTCAGGCGGCGTCATCGGCAGCGGGCGAAATCCTGATCACGCCAAAAGGCACGCTCGGGC
TGCGCGGGCCGATGGTCACGCTCGCCGCCTATGCGCCTCCGCCGCCACTCGGCACCCCGGTCTCGGTGCCGCCGCCCGAC
CATGTCGACACCGGGTTCGCCGCCCGGCTCGACCGGACCAGCGGCGGAATCTGCATCACCGCCCCCCCATCCGGGGTGAT
GGCCGTCGGCGGCTATCGCTTTCTGGCGCAGGACCTGCAGGAGTGGGCGAAACGGCTCGGCCAGGGCGCATTGCTCACCG
CGCTCCCCGATCGCTGGAGCGGATATCGCCTCGCCGGCCGCGCCCAGGACAATGCACGGGCTCGTGAAGCACTTTCAGAG
CTCGGTCTAAATCCTTTGATGGTCGAAGCCTTCCGCGACGGGCCGCCGCGCGGCGAGGAATCTGCCAATCGGCATTGA

Upstream 100 bases:

>100_bases
GCAAGATGGAATCGGATAGAACGGCCGAAAGCAAATGCCCTGACCGGCTACCTGCCCGAAACCTGGTGGGCGAGGCCATC
GACGCAGCAAAGGTGATCAC

Downstream 100 bases:

>100_bases
CCTCGCATTAAGGGTGACGATCTAGGGTCGAACTCCGTCGACAGCGGAGGACCGGCTCTCACAGATGTCGTATCACGCGC
CCATCCTCGTCGTTTCTGAC

Product: putative acid-CoA ligase

Products: NA

Alternate protein names: Acid-CoA Ligase; Acyl-CoA Synthetase/AMP-Acid Ligase II-Like Protein; Acyl-CoA Ligase/Synthetase; 2 3-Dihydrosybenzoate-AMP Ligase; AMP-Dependent Acyl-CoA Synthetase/AMP-Acid Ligases II; Peroxisomal-Co A Synthetase; Fatty-Acid-CoA Ligase

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MSQPNASPTLDGLFRRILARQPDAVALIDPADKARITGQAPARLTYAQADKAISALAAHFTAAGLPANSVIALQLPNTIE
FPLALLAAHRAGLVVALLPQLWRQADITTALNRTGARAIVSTRWIDGVSHADLAMNAAAEAFSIRYVGGFGDDLPEGMAS
LDVAMTDDVSATMPAAQDARRAAIISFDTTPDGVRAIPRTHLHMIAGGLAVFLEGRVPQGAMLLSAQAPSSFAGLASSIV
TWLLSGGTLALHHPFDEAVLESQIRDLGCDTLVAPAPLALRLGETGLAGMPTLRNVIGLWRAPEQVAASSAWTAVPATFT
DVYLFGEAGLFGAQRAETGTPAAIMPGPHTASRGQAASSAAGEILITPKGTLGLRGPMVTLAAYAPPPPLGTPVSVPPPD
HVDTGFAARLDRTSGGICITAPPSGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRWSGYRLAGRAQDNARAREALSE
LGLNPLMVEAFRDGPPRGEESANRH

Sequences:

>Translated_505_residues
MSQPNASPTLDGLFRRILARQPDAVALIDPADKARITGQAPARLTYAQADKAISALAAHFTAAGLPANSVIALQLPNTIE
FPLALLAAHRAGLVVALLPQLWRQADITTALNRTGARAIVSTRWIDGVSHADLAMNAAAEAFSIRYVGGFGDDLPEGMAS
LDVAMTDDVSATMPAAQDARRAAIISFDTTPDGVRAIPRTHLHMIAGGLAVFLEGRVPQGAMLLSAQAPSSFAGLASSIV
TWLLSGGTLALHHPFDEAVLESQIRDLGCDTLVAPAPLALRLGETGLAGMPTLRNVIGLWRAPEQVAASSAWTAVPATFT
DVYLFGEAGLFGAQRAETGTPAAIMPGPHTASRGQAASSAAGEILITPKGTLGLRGPMVTLAAYAPPPPLGTPVSVPPPD
HVDTGFAARLDRTSGGICITAPPSGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRWSGYRLAGRAQDNARAREALSE
LGLNPLMVEAFRDGPPRGEESANRH
>Mature_504_residues
SQPNASPTLDGLFRRILARQPDAVALIDPADKARITGQAPARLTYAQADKAISALAAHFTAAGLPANSVIALQLPNTIEF
PLALLAAHRAGLVVALLPQLWRQADITTALNRTGARAIVSTRWIDGVSHADLAMNAAAEAFSIRYVGGFGDDLPEGMASL
DVAMTDDVSATMPAAQDARRAAIISFDTTPDGVRAIPRTHLHMIAGGLAVFLEGRVPQGAMLLSAQAPSSFAGLASSIVT
WLLSGGTLALHHPFDEAVLESQIRDLGCDTLVAPAPLALRLGETGLAGMPTLRNVIGLWRAPEQVAASSAWTAVPATFTD
VYLFGEAGLFGAQRAETGTPAAIMPGPHTASRGQAASSAAGEILITPKGTLGLRGPMVTLAAYAPPPPLGTPVSVPPPDH
VDTGFAARLDRTSGGICITAPPSGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRWSGYRLAGRAQDNARAREALSEL
GLNPLMVEAFRDGPPRGEESANRH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52573; Mature: 52441

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPNASPTLDGLFRRILARQPDAVALIDPADKARITGQAPARLTYAQADKAISALAAHF
CCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCEEEHHHHHHHHHHHHHHH
TAAGLPANSVIALQLPNTIEFPLALLAAHRAGLVVALLPQLWRQADITTALNRTGARAIV
HHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
STRWIDGVSHADLAMNAAAEAFSIRYVGGFGDDLPEGMASLDVAMTDDVSATMPAAQDAR
HHHHHCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHCCEEEECCCCCCCCCHHHCC
RAAIISFDTTPDGVRAIPRTHLHMIAGGLAVFLEGRVPQGAMLLSAQAPSSFAGLASSIV
CEEEEEECCCCCHHHHCCHHHHHHHHCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHH
TWLLSGGTLALHHPFDEAVLESQIRDLGCDTLVAPAPLALRLGETGLAGMPTLRNVIGLW
HHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHC
RAPEQVAASSAWTAVPATFTDVYLFGEAGLFGAQRAETGTPAAIMPGPHTASRGQAASSA
CCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
AGEILITPKGTLGLRGPMVTLAAYAPPPPLGTPVSVPPPDHVDTGFAARLDRTSGGICIT
CCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEE
APPSGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRWSGYRLAGRAQDNARAREALSE
CCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCCCHHHHHHHHHH
LGLNPLMVEAFRDGPPRGEESANRH
CCCCCEEHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQPNASPTLDGLFRRILARQPDAVALIDPADKARITGQAPARLTYAQADKAISALAAHF
CCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEECCCCCCEEEHHHHHHHHHHHHHHH
TAAGLPANSVIALQLPNTIEFPLALLAAHRAGLVVALLPQLWRQADITTALNRTGARAIV
HHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
STRWIDGVSHADLAMNAAAEAFSIRYVGGFGDDLPEGMASLDVAMTDDVSATMPAAQDAR
HHHHHCCCCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHCCEEEECCCCCCCCCHHHCC
RAAIISFDTTPDGVRAIPRTHLHMIAGGLAVFLEGRVPQGAMLLSAQAPSSFAGLASSIV
CEEEEEECCCCCHHHHCCHHHHHHHHCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHH
TWLLSGGTLALHHPFDEAVLESQIRDLGCDTLVAPAPLALRLGETGLAGMPTLRNVIGLW
HHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHC
RAPEQVAASSAWTAVPATFTDVYLFGEAGLFGAQRAETGTPAAIMPGPHTASRGQAASSA
CCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
AGEILITPKGTLGLRGPMVTLAAYAPPPPLGTPVSVPPPDHVDTGFAARLDRTSGGICIT
CCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEE
APPSGVMAVGGYRFLAQDLQEWAKRLGQGALLTALPDRWSGYRLAGRAQDNARAREALSE
CCCCCEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECCCCCHHHHHHHHHH
LGLNPLMVEAFRDGPPRGEESANRH
CCCCCEEHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA