| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is fct [H]
Identifier: 86749673
GI number: 86749673
Start: 2928963
End: 2931293
Strand: Direct
Name: fct [H]
Synonym: RPB_2554
Alternate gene names: 86749673
Gene position: 2928963-2931293 (Clockwise)
Preceding gene: 86749672
Following gene: 86749674
Centisome position: 54.94
GC content: 64.56
Gene sequence:
>2331_bases ATGCAACGTTTTCTGAGCGCGCTTTGCGCTGCGTCCGTCGCTGCCGTGACGGTCCCCGATCTTGCCTTTGCCCAAACGTC GACCCAAGCCAACACCGGCCTGCCGAGTGTGGTGGTCGAGCCGCCGACGCGAAAGCCGACAAAGAAGCGCCAGGCGAGCG CCACGGCTCCGCGCGCCGCTCCGCGGGCGCCGGCGCAGGCGGCGGTCAGCACCGCGCCGCCGAGCAGCGGTGCGCCGGTG ATCCAGACCACCGCCGGACCGGTGCAGGGCATTCGCGCGCTCACGGCGTCGTCTGCGACCCGGACCGACACCCCGATCGA ACAGATCCCGCAATCGATCCAGGTGGTGTCGCGCCAGCTCATCGAGCAGCAGGGCGCGGTGACGGTCACCGAGGCGGTGC AGAACGTCAGCAACGCCCAGGCGGTCAATCCGTTCGTCATCGCCAACACCGACCTGCAGCAGCTCAAGATCCGCGGCTTC TCTGCGGAACTTTGGCGCGACGGGATGGTGAGCATGTACAACCCTGGCGACCGCGACGGGCTGGTCAATGTCGAGCGCAT CGAGGTGCTGAAGGGCCCGAACGCGATCCTCTATGGCGGCGGCCCCGGCGCCCCGATCGGCGGCGCGGTCAACGTCGTCT CCAAACTGCCGACCGACAAGGCCAGCCAGGAATTCGGCATCGGGCTGGGCTCCTATCAATACTGGAACCCGTTCTTCGAC ATCAACCAGCCGCTCAACCAGGAGAAAACCGCGCTGTTCCGCATCACCGGCGAATACACCGGCAACAACAGCTTCGTCGA TGTGCTGGAATCCAAGCGCTACAGCATCAATCCGACGCTGACGCTGACCAATCGCGAAGACACCACGCTGACGATCCAGG GCTTCCTGTCGCGCCAGCAGCAGCAAGCCTATCAGGGGCTGCCGGTGTACGGCACCATCCTCGGCGATTTCCGCGCGGCC CGCGATCTGTACATCGGCCCGTCGAACATCGAGCCGAGCTATTCGAAGACGCACGGCGCCACCGTGACGCTCGATCATCA GTTCAATTCGGTGTGGTCCGCGAACATCAAGGCGCGCTGGAGCCAGTCGGAATTCGATCAGCTATCGCAATGGGCGTTTG GCGGCGACGCCTTCGGCGCGACGCCTGCCTTCGCGCCGTCGACCTGGCTGCTGTCGAATCTCGAAGTGTTCCAGAAGCAG CAGGAATTCACCATCAATCCCAGCGTCAAGGCGAAGTTCGACACAGCGATCAGCCGCAACACGCTGCTGCTCGGCGCGGA CTACAGCCGCGTCACCGATCGCGGCTTCATGACCGGCGACAATCTCGGCAACACTTGCTTCCTGACCACCTTCGCGTGCC CGCCCGCGGCGGTCGACCTGCAGAATCCGGTGTTCACGATCCCGTACACGCGGCCCAATCCGAGCGCCGGCGCGGAATAC GCGGCGTATTTCAACTTCGACAACACCTACACCACCAAGGGCGGTTACGCGCAATTACAGTCGTCGCTGTACGACCGTGT CCATGTGCTGGCCGGTGCGCGCCTTGCCAATATCGACATCAGCTACACCGAGAACGCGCTGGTGGTGCCGTCGACGTTCG TGACGGACACGACCAAGCTGTTGCCGCGCGCGGGCGTCGTGGTCGATCTGGTCAAGGGGCTGTCGGCCTATGCCAGCTAC AGCGAAGGCATGCGCTGGGCGGGATTCACCCAGGCGGTCGCGCGGCCGGAGCCCGAGTTGTCGCAGCAAGTCGAAGCGGG GTTGAAGTTCAATATCAATGCTGAATTGTCCGGCAGCGTCGCGGTGTTCGAGATCCATCGCGACAACGTGCCGGTGACCA TCGCGCTCGGCGTCGCGGGGCTGACGCAGCAGAAGTCGCGCGGGTTCGAGACCGACATGACCTGGCAGCCGAACCGCAAC TGGAGCTTCCTCGGCAGCTACGGCTACACCGATGCGACCTTCGCCGGAGCGTTCGTCGATTCGTCGGGCGTCATCCCGGC CGGCAACAAGCTGCCCTACGTGCCCGAACATTCCGGGCGGGTGTGGGCGAACTACAAGTTCGATCCGAACGTACTGCCGG GTTGGAGCGTCGGCGCCGGCGTCTATGCGGCATCGAGCCAGTATGTCGACAACGCCAATCTGTGGAAGACCGACGGCTAC TACACGGTCGACGCCAAGATCGGCTACGAGAAGGACGGCTTCCGCGCCTCCATTGCGCTGAAGAATCTGACCGGCGAAAA GTACTTCACGCCGTACGCCTGGCTCGGTGGGCAGGTGGCGCCGGGCGCGCCGCGGATGGTGTACGGCCAGCTCAGCTACC GCTTCAACTGA
Upstream 100 bases:
>100_bases TCCGCGAAGCGGATCGGTTCGAGCCGCGCAGCTCACAAGGTCCTCCGCAAGCCGCCTAGCTGACGTCGTTCGCTAGACGC ACTTTGCTGGAGTACCCCCG
Downstream 100 bases:
>100_bases GGTCAGCGATGTCGATCACCAGGCGGCAGTTCACTCAAACCGCGGCCTCGGCTGCCGCGGCGATCGCGGTCGGCGAGCGT ACCGCTGCTGAAGCGGCGGA
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 776; Mature: 776
Protein sequence:
>776_residues MQRFLSALCAASVAAVTVPDLAFAQTSTQANTGLPSVVVEPPTRKPTKKRQASATAPRAAPRAPAQAAVSTAPPSSGAPV IQTTAGPVQGIRALTASSATRTDTPIEQIPQSIQVVSRQLIEQQGAVTVTEAVQNVSNAQAVNPFVIANTDLQQLKIRGF SAELWRDGMVSMYNPGDRDGLVNVERIEVLKGPNAILYGGGPGAPIGGAVNVVSKLPTDKASQEFGIGLGSYQYWNPFFD INQPLNQEKTALFRITGEYTGNNSFVDVLESKRYSINPTLTLTNREDTTLTIQGFLSRQQQQAYQGLPVYGTILGDFRAA RDLYIGPSNIEPSYSKTHGATVTLDHQFNSVWSANIKARWSQSEFDQLSQWAFGGDAFGATPAFAPSTWLLSNLEVFQKQ QEFTINPSVKAKFDTAISRNTLLLGADYSRVTDRGFMTGDNLGNTCFLTTFACPPAAVDLQNPVFTIPYTRPNPSAGAEY AAYFNFDNTYTTKGGYAQLQSSLYDRVHVLAGARLANIDISYTENALVVPSTFVTDTTKLLPRAGVVVDLVKGLSAYASY SEGMRWAGFTQAVARPEPELSQQVEAGLKFNINAELSGSVAVFEIHRDNVPVTIALGVAGLTQQKSRGFETDMTWQPNRN WSFLGSYGYTDATFAGAFVDSSGVIPAGNKLPYVPEHSGRVWANYKFDPNVLPGWSVGAGVYAASSQYVDNANLWKTDGY YTVDAKIGYEKDGFRASIALKNLTGEKYFTPYAWLGGQVAPGAPRMVYGQLSYRFN
Sequences:
>Translated_776_residues MQRFLSALCAASVAAVTVPDLAFAQTSTQANTGLPSVVVEPPTRKPTKKRQASATAPRAAPRAPAQAAVSTAPPSSGAPV IQTTAGPVQGIRALTASSATRTDTPIEQIPQSIQVVSRQLIEQQGAVTVTEAVQNVSNAQAVNPFVIANTDLQQLKIRGF SAELWRDGMVSMYNPGDRDGLVNVERIEVLKGPNAILYGGGPGAPIGGAVNVVSKLPTDKASQEFGIGLGSYQYWNPFFD INQPLNQEKTALFRITGEYTGNNSFVDVLESKRYSINPTLTLTNREDTTLTIQGFLSRQQQQAYQGLPVYGTILGDFRAA RDLYIGPSNIEPSYSKTHGATVTLDHQFNSVWSANIKARWSQSEFDQLSQWAFGGDAFGATPAFAPSTWLLSNLEVFQKQ QEFTINPSVKAKFDTAISRNTLLLGADYSRVTDRGFMTGDNLGNTCFLTTFACPPAAVDLQNPVFTIPYTRPNPSAGAEY AAYFNFDNTYTTKGGYAQLQSSLYDRVHVLAGARLANIDISYTENALVVPSTFVTDTTKLLPRAGVVVDLVKGLSAYASY SEGMRWAGFTQAVARPEPELSQQVEAGLKFNINAELSGSVAVFEIHRDNVPVTIALGVAGLTQQKSRGFETDMTWQPNRN WSFLGSYGYTDATFAGAFVDSSGVIPAGNKLPYVPEHSGRVWANYKFDPNVLPGWSVGAGVYAASSQYVDNANLWKTDGY YTVDAKIGYEKDGFRASIALKNLTGEKYFTPYAWLGGQVAPGAPRMVYGQLSYRFN >Mature_776_residues MQRFLSALCAASVAAVTVPDLAFAQTSTQANTGLPSVVVEPPTRKPTKKRQASATAPRAAPRAPAQAAVSTAPPSSGAPV IQTTAGPVQGIRALTASSATRTDTPIEQIPQSIQVVSRQLIEQQGAVTVTEAVQNVSNAQAVNPFVIANTDLQQLKIRGF SAELWRDGMVSMYNPGDRDGLVNVERIEVLKGPNAILYGGGPGAPIGGAVNVVSKLPTDKASQEFGIGLGSYQYWNPFFD INQPLNQEKTALFRITGEYTGNNSFVDVLESKRYSINPTLTLTNREDTTLTIQGFLSRQQQQAYQGLPVYGTILGDFRAA RDLYIGPSNIEPSYSKTHGATVTLDHQFNSVWSANIKARWSQSEFDQLSQWAFGGDAFGATPAFAPSTWLLSNLEVFQKQ QEFTINPSVKAKFDTAISRNTLLLGADYSRVTDRGFMTGDNLGNTCFLTTFACPPAAVDLQNPVFTIPYTRPNPSAGAEY AAYFNFDNTYTTKGGYAQLQSSLYDRVHVLAGARLANIDISYTENALVVPSTFVTDTTKLLPRAGVVVDLVKGLSAYASY SEGMRWAGFTQAVARPEPELSQQVEAGLKFNINAELSGSVAVFEIHRDNVPVTIALGVAGLTQQKSRGFETDMTWQPNRN WSFLGSYGYTDATFAGAFVDSSGVIPAGNKLPYVPEHSGRVWANYKFDPNVLPGWSVGAGVYAASSQYVDNANLWKTDGY YTVDAKIGYEKDGFRASIALKNLTGEKYFTPYAWLGGQVAPGAPRMVYGQLSYRFN
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=757, Percent_Identity=27.2126816380449, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1787344, Length=781, Percent_Identity=24.3277848911652, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1787024, Length=723, Percent_Identity=23.2365145228216, Blast_Score=86, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83957; Mature: 83957
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRFLSALCAASVAAVTVPDLAFAQTSTQANTGLPSVVVEPPTRKPTKKRQASATAPRAA CHHHHHHHHHHHHHEEECCCHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCC PRAPAQAAVSTAPPSSGAPVIQTTAGPVQGIRALTASSATRTDTPIEQIPQSIQVVSRQL CCCCHHHHEECCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH IEQQGAVTVTEAVQNVSNAQAVNPFVIANTDLQQLKIRGFSAELWRDGMVSMYNPGDRDG HHHCCCEEHHHHHHHHCCCCCCCCEEEECCCHHHHEECCCCHHHHCCCCEEECCCCCCCC LVNVERIEVLKGPNAILYGGGPGAPIGGAVNVVSKLPTDKASQEFGIGLGSYQYWNPFFD CEEHEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCC INQPLNQEKTALFRITGEYTGNNSFVDVLESKRYSINPTLTLTNREDTTLTIQGFLSRQQ CCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCEECCCEEEEECCCCCEEEEHHHHHHHH QQAYQGLPVYGTILGDFRAARDLYIGPSNIEPSYSKTHGATVTLDHQFNSVWSANIKARW HHHHCCCCEEEEHHHHHHHHCEEEECCCCCCCCCCCCCCCEEEEECCCCCEEECCEEEEC SQSEFDQLSQWAFGGDAFGATPAFAPSTWLLSNLEVFQKQQEFTINPSVKAKFDTAISRN CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEHHHCCCC TLLLGADYSRVTDRGFMTGDNLGNTCFLTTFACPPAAVDLQNPVFTIPYTRPNPSAGAEY EEEEECCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCEEEEECCCCCCCCCCCE AAYFNFDNTYTTKGGYAQLQSSLYDRVHVLAGARLANIDISYTENALVVPSTFVTDTTKL EEEEECCCCEECCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEECCHHHCCHHHH LPRAGVVVDLVKGLSAYASYSEGMRWAGFTQAVARPEPELSQQVEAGLKFNINAELSGSV HCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHCCCEEEECEEECCCE AVFEIHRDNVPVTIALGVAGLTQQKSRGFETDMTWQPNRNWSFLGSYGYTDATFAGAFVD EEEEEECCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHEEEEEC SSGVIPAGNKLPYVPEHSGRVWANYKFDPNVLPGWSVGAGVYAASSQYVDNANLWKTDGY CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCEEECCCE YTVDAKIGYEKDGFRASIALKNLTGEKYFTPYAWLGGQVAPGAPRMVYGQLSYRFN EEEEEEECCCCCCCEEEEEEEECCCCCEECCHHHCCCEECCCCCCEEEEEEEEECC >Mature Secondary Structure MQRFLSALCAASVAAVTVPDLAFAQTSTQANTGLPSVVVEPPTRKPTKKRQASATAPRAA CHHHHHHHHHHHHHEEECCCHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCC PRAPAQAAVSTAPPSSGAPVIQTTAGPVQGIRALTASSATRTDTPIEQIPQSIQVVSRQL CCCCHHHHEECCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH IEQQGAVTVTEAVQNVSNAQAVNPFVIANTDLQQLKIRGFSAELWRDGMVSMYNPGDRDG HHHCCCEEHHHHHHHHCCCCCCCCEEEECCCHHHHEECCCCHHHHCCCCEEECCCCCCCC LVNVERIEVLKGPNAILYGGGPGAPIGGAVNVVSKLPTDKASQEFGIGLGSYQYWNPFFD CEEHEEEEEECCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCC INQPLNQEKTALFRITGEYTGNNSFVDVLESKRYSINPTLTLTNREDTTLTIQGFLSRQQ CCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCEECCCEEEEECCCCCEEEEHHHHHHHH QQAYQGLPVYGTILGDFRAARDLYIGPSNIEPSYSKTHGATVTLDHQFNSVWSANIKARW HHHHCCCCEEEEHHHHHHHHCEEEECCCCCCCCCCCCCCCEEEEECCCCCEEECCEEEEC SQSEFDQLSQWAFGGDAFGATPAFAPSTWLLSNLEVFQKQQEFTINPSVKAKFDTAISRN CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEHHHCCCC TLLLGADYSRVTDRGFMTGDNLGNTCFLTTFACPPAAVDLQNPVFTIPYTRPNPSAGAEY EEEEECCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCEEEEECCCCCCCCCCCE AAYFNFDNTYTTKGGYAQLQSSLYDRVHVLAGARLANIDISYTENALVVPSTFVTDTTKL EEEEECCCCEECCCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEECCHHHCCHHHH LPRAGVVVDLVKGLSAYASYSEGMRWAGFTQAVARPEPELSQQVEAGLKFNINAELSGSV HCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHCCCEEEECEEECCCE AVFEIHRDNVPVTIALGVAGLTQQKSRGFETDMTWQPNRNWSFLGSYGYTDATFAGAFVD EEEEEECCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHEEEEEC SSGVIPAGNKLPYVPEHSGRVWANYKFDPNVLPGWSVGAGVYAASSQYVDNANLWKTDGY CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCEEECCCE YTVDAKIGYEKDGFRASIALKNLTGEKYFTPYAWLGGQVAPGAPRMVYGQLSYRFN EEEEEEECCCCCCCEEEEEEEECCCCCEECCHHHCCCEECCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]