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The map label for this gene is cspE [C]

Identifier: 86749607

GI number: 86749607

Start: 2846177

End: 2846380

Strand: Direct

Name: cspE [C]

Synonym: RPB_2487

Alternate gene names: 86749607

Gene position: 2846177-2846380 (Clockwise)

Preceding gene: 86749605

Following gene: 86749610

Centisome position: 53.38

GC content: 56.37

Gene sequence:

>204_bases
ATGCAAAAGGGCACCGTCAAGTGGTTCAACCCGACCAAGGGTTATGGTTTCATCCGTCCTACCAGCGGCGACAAGGACGT
CTTCGTCCATATCTCGGCGGTCGAGCGCGCCGGTCTCAGCACTCTGAATGAAAACCAGGCGATCGAATACGATCTGGTCG
AAAATCGCGGCAAGACCTCGGCGGAGAACCTCAAGCTCACGTGA

Upstream 100 bases:

>100_bases
ATCAAGTCTTGCAGCAGGCAGCGCTTACGGGATCGCCGTTTGTGGCGTGGCACGCGGATAGCGCGCCACGTCTTTTTTGT
GTCTAGACAGGAGACAGGCG

Downstream 100 bases:

>100_bases
GCAGGTTCGATCGTCTCGATCAGTTCTCCGACGGTACGATCAGCGCCTGATCATGCGGGCCACTCGAGGTCGATCTGCAC
AGATCGCCCTCGAATCGCGT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MQKGTVKWFNPTKGYGFIRPTSGDKDVFVHISAVERAGLSTLNENQAIEYDLVENRGKTSAENLKLT

Sequences:

>Translated_67_residues
MQKGTVKWFNPTKGYGFIRPTSGDKDVFVHISAVERAGLSTLNENQAIEYDLVENRGKTSAENLKLT
>Mature_67_residues
MQKGTVKWFNPTKGYGFIRPTSGDKDVFVHISAVERAGLSTLNENQAIEYDLVENRGKTSAENLKLT

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=50, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=48.3870967741936, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1787834, Length=58, Percent_Identity=55.1724137931034, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=47.5409836065574, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787107, Length=52, Percent_Identity=48.0769230769231, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=44.2622950819672, Blast_Score=62, Evalue=6e-12,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=43.75, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7472; Mature: 7472

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKGTVKWFNPTKGYGFIRPTSGDKDVFVHISAVERAGLSTLNENQAIEYDLVENRGKTS
CCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCC
AENLKLT
CCCEEEC
>Mature Secondary Structure
MQKGTVKWFNPTKGYGFIRPTSGDKDVFVHISAVERAGLSTLNENQAIEYDLVENRGKTS
CCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCC
AENLKLT
CCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]