Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 86749585

GI number: 86749585

Start: 2820847

End: 2822130

Strand: Reverse

Name: yciR [C]

Synonym: RPB_2465

Alternate gene names: 86749585

Gene position: 2822130-2820847 (Counterclockwise)

Preceding gene: 86749593

Following gene: 86749584

Centisome position: 52.93

GC content: 65.11

Gene sequence:

>1284_bases
ATGCGCCGCGTGAACAATCCCAAACTCAACTTCATCGAAGCAGCCAACGCCGGGGGGCCGATCGTCGAGACGCGCCTGAT
CCGATGGCTGATCAACGGTCCCAGACCGCAACCCGACGCCATCCTGCGCCGCCTGCTGCTGCAAAGTCAGACCAAGACGC
GCACGCTGCTGATGGCCATGCTGTCGACGACGATGTTCACGATCATCGCGGCGCTGTTGACGGGGAAGACCTGGGCCTAT
GCCTGGATTGCGTTCGAGGTGGCCTTCGGCATTGCGCGCTACAGTGTCGCGCGAAGGATGAGCACAGCACACGCGTCCGA
TCGGCCCGCCGACGGACTGCCAATCTACCTCGGGCTCGCCTGGGCGCTCAACTATTCGGTCGGCTGCACGCTCTGCGTCC
TGACGGGTCAAGGACCTTTGATTCTGCTGACCGGCATCGTCATCGCGGGGCTTTCCGGGGCCATCTCCTCCCGACATGCC
GGCACGCCGCGCTACGGCATCGCCCTGATCTGCATTCTGGTGCTGCCATACACGGTGGCGATGGTGTTTTCGCCGATTGC
GCAGACCTACCTGATCGCGCTGCTCATTCCGGGCTGGGGAGCCGGAATGGCTCTCCTTCTGTTCGAGAACTACGATGTTC
TGCTCCATCTGTTTCTTTCGGAGCGGGAAAACAAATGGCTGGCGAACTACGACCAGCTCACTGGCCTGCCGAACCGGACC
ATGCAGCATCGGCGCTTCGACGAGTTGCTCCGCGACGCGAGGGGCGCGCCAGGACGGGACGATCAGCCTCTGACGGTGCT
CTGCCTCGACCTCGACGGCTTCAAGGCCGCCAATGACGGCTACGGCCATGCGGTCGGCGACGCTGTGCTGGTGGTGGTGG
CCGAACGGCTGCGCAGTTGCGTGCGCGATCACGACCTCATCTTCCGGGTCGGCGGCGACGAATTCGTGATCCTGCTTCCG
GCTGTCTCGGCGATGGAAAGCGCGCCGATCGCCGAGCGGGTGATCGCGCGGATCGCCCAGCCCTTCGACCTCGGCCAAGA
CACCCCGCTCAGCATCGGCGTCAGCATCGGCAGCGCCACTTTCCCCAACGACGGCCCGACTGCCGACGACCTGTTGCGAT
CGGCCGATCACGCAATGTACGAGGCCAAGCGGCGCGGCAGAGGCGTCGTTGTCCACTGCGGTGCCCGCGACGACGCGATC
GGGCTGGTTCCAATGCCGGATGCCGACGCCCGCGCGGCGCGCCGGGTTTGGTCCGCGGCACACGCCGACAAGGTTGATTC
CTGA

Upstream 100 bases:

>100_bases
TCACCCTGTCGAGCCCCCGGCGAAATCTTCCGCACCTGCGAAAAGTACCTATAAACAATTTGGGGAATAGCCTTTGGGAT
AACACCAAACAACTCACCTG

Downstream 100 bases:

>100_bases
GGTCGATGGCGCCGGACACCGGTCCGACCCTTGCCATTGCGACAAAAATACGTATAACCCGCGCATCCGCAGATCCCGGC
CGGGAGCTGAACGGACGGTC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MRRVNNPKLNFIEAANAGGPIVETRLIRWLINGPRPQPDAILRRLLLQSQTKTRTLLMAMLSTTMFTIIAALLTGKTWAY
AWIAFEVAFGIARYSVARRMSTAHASDRPADGLPIYLGLAWALNYSVGCTLCVLTGQGPLILLTGIVIAGLSGAISSRHA
GTPRYGIALICILVLPYTVAMVFSPIAQTYLIALLIPGWGAGMALLLFENYDVLLHLFLSERENKWLANYDQLTGLPNRT
MQHRRFDELLRDARGAPGRDDQPLTVLCLDLDGFKAANDGYGHAVGDAVLVVVAERLRSCVRDHDLIFRVGGDEFVILLP
AVSAMESAPIAERVIARIAQPFDLGQDTPLSIGVSIGSATFPNDGPTADDLLRSADHAMYEAKRRGRGVVVHCGARDDAI
GLVPMPDADARAARRVWSAAHADKVDS

Sequences:

>Translated_427_residues
MRRVNNPKLNFIEAANAGGPIVETRLIRWLINGPRPQPDAILRRLLLQSQTKTRTLLMAMLSTTMFTIIAALLTGKTWAY
AWIAFEVAFGIARYSVARRMSTAHASDRPADGLPIYLGLAWALNYSVGCTLCVLTGQGPLILLTGIVIAGLSGAISSRHA
GTPRYGIALICILVLPYTVAMVFSPIAQTYLIALLIPGWGAGMALLLFENYDVLLHLFLSERENKWLANYDQLTGLPNRT
MQHRRFDELLRDARGAPGRDDQPLTVLCLDLDGFKAANDGYGHAVGDAVLVVVAERLRSCVRDHDLIFRVGGDEFVILLP
AVSAMESAPIAERVIARIAQPFDLGQDTPLSIGVSIGSATFPNDGPTADDLLRSADHAMYEAKRRGRGVVVHCGARDDAI
GLVPMPDADARAARRVWSAAHADKVDS
>Mature_427_residues
MRRVNNPKLNFIEAANAGGPIVETRLIRWLINGPRPQPDAILRRLLLQSQTKTRTLLMAMLSTTMFTIIAALLTGKTWAY
AWIAFEVAFGIARYSVARRMSTAHASDRPADGLPIYLGLAWALNYSVGCTLCVLTGQGPLILLTGIVIAGLSGAISSRHA
GTPRYGIALICILVLPYTVAMVFSPIAQTYLIALLIPGWGAGMALLLFENYDVLLHLFLSERENKWLANYDQLTGLPNRT
MQHRRFDELLRDARGAPGRDDQPLTVLCLDLDGFKAANDGYGHAVGDAVLVVVAERLRSCVRDHDLIFRVGGDEFVILLP
AVSAMESAPIAERVIARIAQPFDLGQDTPLSIGVSIGSATFPNDGPTADDLLRSADHAMYEAKRRGRGVVVHCGARDDAI
GLVPMPDADARAARRVWSAAHADKVDS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=224, Percent_Identity=33.4821428571429, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=37.888198757764, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787262, Length=233, Percent_Identity=29.6137339055794, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787802, Length=281, Percent_Identity=29.1814946619217, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=35.9756097560976, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=236, Percent_Identity=27.9661016949153, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=36.2573099415205, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082007, Length=197, Percent_Identity=31.9796954314721, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788381, Length=169, Percent_Identity=33.7278106508876, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=32.484076433121, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=35.8490566037736, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788085, Length=188, Percent_Identity=29.2553191489362, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=31.8181818181818, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 46372; Mature: 46372

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVNNPKLNFIEAANAGGPIVETRLIRWLINGPRPQPDAILRRLLLQSQTKTRTLLMAM
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LSTTMFTIIAALLTGKTWAYAWIAFEVAFGIARYSVARRMSTAHASDRPADGLPIYLGLA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHH
WALNYSVGCTLCVLTGQGPLILLTGIVIAGLSGAISSRHAGTPRYGIALICILVLPYTVA
HHHCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
MVFSPIAQTYLIALLIPGWGAGMALLLFENYDVLLHLFLSERENKWLANYDQLTGLPNRT
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHCCHHHHCCCCCHH
MQHRRFDELLRDARGAPGRDDQPLTVLCLDLDGFKAANDGYGHAVGDAVLVVVAERLRSC
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VRDHDLIFRVGGDEFVILLPAVSAMESAPIAERVIARIAQPFDLGQDTPLSIGVSIGSAT
HCCCCEEEEECCCCEEEEEECHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
FPNDGPTADDLLRSADHAMYEAKRRGRGVVVHCGARDDAIGLVPMPDADARAARRVWSAA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHH
HADKVDS
HHCCCCC
>Mature Secondary Structure
MRRVNNPKLNFIEAANAGGPIVETRLIRWLINGPRPQPDAILRRLLLQSQTKTRTLLMAM
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
LSTTMFTIIAALLTGKTWAYAWIAFEVAFGIARYSVARRMSTAHASDRPADGLPIYLGLA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHH
WALNYSVGCTLCVLTGQGPLILLTGIVIAGLSGAISSRHAGTPRYGIALICILVLPYTVA
HHHCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
MVFSPIAQTYLIALLIPGWGAGMALLLFENYDVLLHLFLSERENKWLANYDQLTGLPNRT
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHCCHHHHCCCCCHH
MQHRRFDELLRDARGAPGRDDQPLTVLCLDLDGFKAANDGYGHAVGDAVLVVVAERLRSC
HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VRDHDLIFRVGGDEFVILLPAVSAMESAPIAERVIARIAQPFDLGQDTPLSIGVSIGSAT
HCCCCEEEEECCCCEEEEEECHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
FPNDGPTADDLLRSADHAMYEAKRRGRGVVVHCGARDDAIGLVPMPDADARAARRVWSAA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHH
HADKVDS
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]