BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is yciK [H]

Identifier: 86749571

GI number: 86749571

Start: 2807391

End: 2808134

Strand: Reverse

Name: yciK [H]

Synonym: RPB_2451

Alternate gene names: 86749571

Gene position: 2808134-2807391 (Counterclockwise)

Preceding gene: 86749572

Following gene: 86749570

Centisome position: 52.67

GC content: 68.01

Gene sequence:

>744_bases
ATGACCCAACCCCTCGCCTCCCGCATCGCACTCGTCACCGGCGCTTCGCGCGGCATCGGCTATGCGACCGCGCGGGCCCT
CGCCAGGGCCGGTGCCCATGTCATCGCCGTGGCCAAGACGCAGGGCGGCCTTGAAGAACTCGACGACGCGATCCGCGCCG
AGGGCGGCCACGCCGCGACGCTGGTGCCGCTGGATCTCACCGACTTCGATGCGATCGGCCGACTCGGCGCCTCGATCCAC
GAGCGCCACGGCAAGCTCGACGTGCTGGTCGGCAATGCCGGCATCGCCGGTCCGTCGTCGCCGCTCGGCCATATCGAGAT
GAAGTCCTGGACCGGCGTGATCGGCATCAACCTCACCGCCAACTTCCAGCTGATCCGCTGCATGGAGCCGCTGCTGCGGA
TGTCGGATGCCGGACGCGCGGTGTTCCTGACGTCGCGGGCCGGCGGCAGGGCCCCGGCCTATCGCGGCCCCTACGCGGCC
TCCAAGGCGGCGCTTGAGACTTTAGTTCAAGTCTGGGCCAAGGAGGTGGTGAATACCACCCCGATCCGTATCAATCTGTT
CGATCCCGGCCCCACCCGCACCAAGCTGCGCGGCACCATCATGCCCGGCGAAGACCCTGAAACGCTGCCGTCGCCGGAGC
AGATCGCGGAGCTACTGGTACCTCTCTGCCTGCCGTCCTGGTCCGAGACCGGCAAACTGTTCGACGCGGCGTCCCGAACC
TTGAAAGACCCCTCCGCCGATTGA

Upstream 100 bases:

>100_bases
CTAAAGTTCGTCGTGCCCGGCCTTGTGCCGGGCATCCACGTCTTTAGAAGGTCGTGGATGACCGGGGCCAGCCCGGCCGC
CCCACGGACAAGAGCACGTC

Downstream 100 bases:

>100_bases
CTTCGGCCCGGTGGCGCGATTGACTGAACGTAAGCGGGGGCGACACCCGCTCACAATCGACCACCCAAGGGGGAAATGAA
TGAGAGTTATCTTCTCGTGC

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTQPLASRIALVTGASRGIGYATARALARAGAHVIAVAKTQGGLEELDDAIRAEGGHAATLVPLDLTDFDAIGRLGASIH
ERHGKLDVLVGNAGIAGPSSPLGHIEMKSWTGVIGINLTANFQLIRCMEPLLRMSDAGRAVFLTSRAGGRAPAYRGPYAA
SKAALETLVQVWAKEVVNTTPIRINLFDPGPTRTKLRGTIMPGEDPETLPSPEQIAELLVPLCLPSWSETGKLFDAASRT
LKDPSAD

Sequences:

>Translated_247_residues
MTQPLASRIALVTGASRGIGYATARALARAGAHVIAVAKTQGGLEELDDAIRAEGGHAATLVPLDLTDFDAIGRLGASIH
ERHGKLDVLVGNAGIAGPSSPLGHIEMKSWTGVIGINLTANFQLIRCMEPLLRMSDAGRAVFLTSRAGGRAPAYRGPYAA
SKAALETLVQVWAKEVVNTTPIRINLFDPGPTRTKLRGTIMPGEDPETLPSPEQIAELLVPLCLPSWSETGKLFDAASRT
LKDPSAD
>Mature_246_residues
TQPLASRIALVTGASRGIGYATARALARAGAHVIAVAKTQGGLEELDDAIRAEGGHAATLVPLDLTDFDAIGRLGASIHE
RHGKLDVLVGNAGIAGPSSPLGHIEMKSWTGVIGINLTANFQLIRCMEPLLRMSDAGRAVFLTSRAGGRAPAYRGPYAAS
KAALETLVQVWAKEVVNTTPIRINLFDPGPTRTKLRGTIMPGEDPETLPSPEQIAELLVPLCLPSWSETGKLFDAASRTL
KDPSAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=215, Percent_Identity=30.2325581395349, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI32483357, Length=230, Percent_Identity=28.695652173913, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI109715829, Length=231, Percent_Identity=29.8701298701299, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4504505, Length=243, Percent_Identity=27.9835390946502, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=29.7520661157025, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI33667109, Length=202, Percent_Identity=32.1782178217822, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=29.957805907173, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=28.4263959390863, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI126723750, Length=224, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=28.804347826087, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI22507405, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI40548397, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010158, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010156, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI22758144, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI19743808, Length=192, Percent_Identity=28.6458333333333, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787526, Length=235, Percent_Identity=37.4468085106383, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787335, Length=189, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082100, Length=212, Percent_Identity=30.6603773584906, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI2367175, Length=199, Percent_Identity=32.6633165829146, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790717, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082160, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789378, Length=210, Percent_Identity=32.8571428571429, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1786812, Length=198, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=213, Percent_Identity=28.6384976525822, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=242, Percent_Identity=28.9256198347107, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=218, Percent_Identity=28.8990825688073, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=211, Percent_Identity=25.5924170616114, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=248, Percent_Identity=24.1935483870968, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=228, Percent_Identity=29.3859649122807, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=224, Percent_Identity=30.3571428571429, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=199, Percent_Identity=32.1608040201005, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=33.1632653061224, Blast_Score=79, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6322227, Length=205, Percent_Identity=30.2439024390244, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=210, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=244, Percent_Identity=27.4590163934426, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358495, Length=235, Percent_Identity=27.2340425531915, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21355319, Length=202, Percent_Identity=28.7128712871287, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=33.502538071066, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=31.3008130081301, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21357041, Length=194, Percent_Identity=32.4742268041237, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571526, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24639444, Length=238, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24663911, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25989; Mature: 25858

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPLASRIALVTGASRGIGYATARALARAGAHVIAVAKTQGGLEELDDAIRAEGGHAAT
CCCCHHHHEEHEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCEEE
LVPLDLTDFDAIGRLGASIHERHGKLDVLVGNAGIAGPSSPLGHIEMKSWTGVIGINLTA
EEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCEEEEEEEEC
NFQLIRCMEPLLRMSDAGRAVFLTSRAGGRAPAYRGPYAASKAALETLVQVWAKEVVNTT
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PIRINLFDPGPTRTKLRGTIMPGEDPETLPSPEQIAELLVPLCLPSWSETGKLFDAASRT
CEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LKDPSAD
CCCCCCC
>Mature Secondary Structure 
TQPLASRIALVTGASRGIGYATARALARAGAHVIAVAKTQGGLEELDDAIRAEGGHAAT
CCCHHHHEEHEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCEEE
LVPLDLTDFDAIGRLGASIHERHGKLDVLVGNAGIAGPSSPLGHIEMKSWTGVIGINLTA
EEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCEEEEEEEEC
NFQLIRCMEPLLRMSDAGRAVFLTSRAGGRAPAYRGPYAASKAALETLVQVWAKEVVNTT
CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PIRINLFDPGPTRTKLRGTIMPGEDPETLPSPEQIAELLVPLCLPSWSETGKLFDAASRT
CEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LKDPSAD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]