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The map label for this gene is xynD [H]

Identifier: 86749498

GI number: 86749498

Start: 2731881

End: 2732678

Strand: Reverse

Name: xynD [H]

Synonym: RPB_2378

Alternate gene names: 86749498

Gene position: 2732678-2731881 (Counterclockwise)

Preceding gene: 86749503

Following gene: 86749497

Centisome position: 51.25

GC content: 67.29

Gene sequence:

>798_bases
ATGAACGCATCGACAGCACTGGCCGCGATTGTCACTCTCGGCATTCTCGGCTCCGCGGCGCAGGCCGCCGACTGCGCCCG
CCCCGGGGCGCTCGGCACCGCGCGCACCATGGTCGTCGACGCCGCGAAATACCCGCGCATCGGGACCAAGAGCTTTCCGC
AGACATTGCCGTTGGACGACCACGAGGTCGTCCTGACGTTCGACGACGGCCCTGCGGCGACGACACCGAAGGTGCTGAAG
GCGCTCGCCGACGAATGCGTCAAGGCGACGTTCTTCCTGGTCGGCAAGCCGGCCGCCGAAACGCCCGGCCTGGTCAAGCG
GATCGCGGCCGAGGGCCACACCGTCGCGCATCACACCTGGACGCACAAACATCTGCCGAGTCTCACCTATGCCGACGCGC
TGGCCGAGATCGACCGCGGCATCGCCGCCGATGAGGCGATCCTCCGCCGCAACGGCATCGCGGTGTCGCCCACGAAGTTC
TTCCGTTTTCCCTATTTCGAATCGACGCCTGCCTTGCTCGACACGCTGCAAGCGCGTGGGATCGTGGTGTGGGGCGCCGA
CCTCTGGGCCAGCGACTGGAACGTGATGACGCCCGAGGTGCAGCTCAAGCTGATCACCGATCGGCTGAAGACGACCGGCA
AGGGCATCATCCTGTTTCACGACCCCCGCGCGCAAACCGCTGAAATGATGCCGGCTTTCCTGCGCTGGCTGCGCGACAAT
CAGTATCGCGTCGTGCATGCCGTGCCGCCACCGGCCGGGCCGCCGGTGGTCGCCGCCGGCTCTCATGCGACGCGCTGA

Upstream 100 bases:

>100_bases
CGATCGGCGGATCGAACGACTTTGGCAATACTCAATCGGTGATGTACGGCGCAATGAATTTCGTGACACCCGCGATCAAT
CATCGGCCGGAAAGGGTGTC

Downstream 100 bases:

>100_bases
TCGCAGGCTGGCGCCGGCTGAGAAACCGTGATCAATGCCACAGTTAAGCTGCTGTTCAGGCTGCTGACTTACGGTGAGAA
GCGACTGATTGGGCGGTCCG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MNASTALAAIVTLGILGSAAQAADCARPGALGTARTMVVDAAKYPRIGTKSFPQTLPLDDHEVVLTFDDGPAATTPKVLK
ALADECVKATFFLVGKPAAETPGLVKRIAAEGHTVAHHTWTHKHLPSLTYADALAEIDRGIAADEAILRRNGIAVSPTKF
FRFPYFESTPALLDTLQARGIVVWGADLWASDWNVMTPEVQLKLITDRLKTTGKGIILFHDPRAQTAEMMPAFLRWLRDN
QYRVVHAVPPPAGPPVVAAGSHATR

Sequences:

>Translated_265_residues
MNASTALAAIVTLGILGSAAQAADCARPGALGTARTMVVDAAKYPRIGTKSFPQTLPLDDHEVVLTFDDGPAATTPKVLK
ALADECVKATFFLVGKPAAETPGLVKRIAAEGHTVAHHTWTHKHLPSLTYADALAEIDRGIAADEAILRRNGIAVSPTKF
FRFPYFESTPALLDTLQARGIVVWGADLWASDWNVMTPEVQLKLITDRLKTTGKGIILFHDPRAQTAEMMPAFLRWLRDN
QYRVVHAVPPPAGPPVVAAGSHATR
>Mature_265_residues
MNASTALAAIVTLGILGSAAQAADCARPGALGTARTMVVDAAKYPRIGTKSFPQTLPLDDHEVVLTFDDGPAATTPKVLK
ALADECVKATFFLVGKPAAETPGLVKRIAAEGHTVAHHTWTHKHLPSLTYADALAEIDRGIAADEAILRRNGIAVSPTKF
FRFPYFESTPALLDTLQARGIVVWGADLWASDWNVMTPEVQLKLITDRLKTTGKGIILFHDPRAQTAEMMPAFLRWLRDN
QYRVVHAVPPPAGPPVVAAGSHATR

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=191, Percent_Identity=30.3664921465969, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6323338, Length=169, Percent_Identity=31.9526627218935, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 28470; Mature: 28470

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASTALAAIVTLGILGSAAQAADCARPGALGTARTMVVDAAKYPRIGTKSFPQTLPLDD
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHEEEEHHHCCCCCCCCCCCCCCCCC
HEVVLTFDDGPAATTPKVLKALADECVKATFFLVGKPAAETPGLVKRIAAEGHTVAHHTW
CEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCEEEEECC
THKHLPSLTYADALAEIDRGIAADEAILRRNGIAVSPTKFFRFPYFESTPALLDTLQARG
CHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEECCHHHEECCCCCCCHHHHHHHHHCE
IVVWGADLWASDWNVMTPEVQLKLITDRLKTTGKGIILFHDPRAQTAEMMPAFLRWLRDN
EEEECCCCCCCCCCEECCCEEEEEEHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC
QYRVVHAVPPPAGPPVVAAGSHATR
CEEEEEECCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MNASTALAAIVTLGILGSAAQAADCARPGALGTARTMVVDAAKYPRIGTKSFPQTLPLDD
CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHEEEEHHHCCCCCCCCCCCCCCCCC
HEVVLTFDDGPAATTPKVLKALADECVKATFFLVGKPAAETPGLVKRIAAEGHTVAHHTW
CEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCEEEEECC
THKHLPSLTYADALAEIDRGIAADEAILRRNGIAVSPTKFFRFPYFESTPALLDTLQARG
CHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEECCHHHEECCCCCCCHHHHHHHHHCE
IVVWGADLWASDWNVMTPEVQLKLITDRLKTTGKGIILFHDPRAQTAEMMPAFLRWLRDN
EEEECCCCCCCCCCEECCCEEEEEEHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC
QYRVVHAVPPPAGPPVVAAGSHATR
CEEEEEECCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]