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The map label for this gene is cph2 [H]

Identifier: 86749035

GI number: 86749035

Start: 2184631

End: 2186490

Strand: Reverse

Name: cph2 [H]

Synonym: RPB_1912

Alternate gene names: 86749035

Gene position: 2186490-2184631 (Counterclockwise)

Preceding gene: 86749039

Following gene: 86749034

Centisome position: 41.01

GC content: 66.94

Gene sequence:

>1860_bases
ATGTTCGTGCTGGCGATGAGCGCCTGCGTGCTCGCGCTCGTGGTCTGGAAGGGCTACGACGCCAGACGCAATGCGCTCGC
GCAGAGCGAGACGGAGATGCGCAATCTGGCGCATTCGCTGGCGGAACACGCCTCCCACACGATTCAATCGGCCGACGTGG
TGATGGACGATCTCGTCGCCTTCATCCGGTTCCAGCCGTTTCCCGATCGCGCTCGGTTCGACGCGCGGCTGCGCGAGGTC
TCGGAGAAGCTGCCCCAGATCAAGGAACTCGCGACCCTCGACGCGAAAGGCGACGTCGACCATGCGTCGGTGACGCCGCC
TCCCGCTATCAACAATGCCGACCGCGACTACTTCGTCTACCACCGCGATCATGCCGACCCGAAGCTGCGGATTACTGGCC
CGATCGTCTCGCGCGCCTCGGGTCAACCGGTGATTGCAGTGACGCGACGACTCGAAACCGCAGACGGCGGCTTCGCGGGC
ATCGTCGTCGCAACCATCGAGAGCGACTATTTCACCGAATTCTACAAGACTTTCGATCTCGGCGCCGGCAGCGGCATCAC
TTTGTCCGGCGGCGACGGCCATATCCTGGTCCGTTGGCCGACGGCGGCGGGCGACCTGTCGAAGAGCCGGCTTTTCGAGA
GAATGCTGCCGCGCAGCCCGGTCGGATACAATCTCGCAATCTCGCCGTTCGACGGCCTTCAGAAATACTATGCCTACGAG
CAGCTATCGCGCTATCCGCTGGTCGTCACGGTCGCGCGCACCGAGGTGTCGGTGCTGGCCGACTGGCGCGAGGCGGTCCG
CTCCGATGCCGTGGTGGCGACGGCGGCGCTCGCCTGCATCGTGCTGCTGGCGGCCGGGCTCGCGGTGCAACTGCGCAACC
GCGAGCGCTTCGAGAGGCTGCTGCGCGAGCGTGACGCGCGTCACCGTCTGATCGACGCGAACATCGGCGACGTCGTCGTC
GTGCTCGACGGCCGGGGCGTCGTCACCTTCGTGTCGATGTCGATCGAGACCGTGCTCGGTTTCAGGCCGGAGGAGGTTCT
GGGCCGCGTCTATTTCGACATGATGCACCCCGACGACGTCGCGGGCCTCCAGGCGATGGGCAAGCGTCTGCCTGACGTCC
CCAACGGGCTGCGCGCCGAGTTCCGGATGGAACGCGCCGACGGCACGATGGTCTGGCTCGAGGCCAATTTCAGGTTCACC
CGCCAGGATGGCCGGCCGGGGCGCAGTATCGTCTGCACGCTGCGCGACGTCACCCGCCGCAAGGAGATGGAGGACGAAGT
CGAGGCACTCAATTCCCGCCTTGCGGAAATGGCCAGGACCGACGCCCTCACCGGCTTGCCGAACCGCCGTGCGCTCGACG
ATTTCATCGCCGGCGAATTCGAGGCGAGCCATGACCTGTCGGTGCTGATGATCGACGTCGACGACTTCAAAGGCTTCAAC
GACCGTCTCGGCCACCACGCCGGCGATGACGCGCTCAGGCAACTCGGTCGATTGCTGGCCGGGACTGCGGCCGGCGCAGG
CGGTTTCGCTGCGCGCTACGGCGGCGAGGAATTCACCATCGTCCTGCCCGGCACCGGGAAGGCCGTCGCGATCGCCTTCG
CCGAAGAGCTGCAGGCAGCCATCCGCGCGCTCGGCATCGTCAACCCCAGCGCGGCGCGCGGCAGACTCACCGTGAGCATC
GGCATCGCCGACAAGATCGCCAGTATCTGCGACCCGGCCACGCTGCTCCGCTGTGCCGACATCGCGCTCTACGAGGCGAA
GCGGCGCGGCCGCGATTGCAGCGTTGCGGCCCCTGCCTTTGTCGGCGACGCCGGATCGTTGGTCCCCGACGTCGCCACCC
GGACCGGCACGCCGGCCTGA

Upstream 100 bases:

>100_bases
CTGTGCGCGCAACGAAGCCCCCCGCAGGCCGATGAAATCCCGCATCCTCCCATCGTCCAATCCGATCGCCCGACTGTCGA
CGCCGGCGCTGATCGTCACA

Downstream 100 bases:

>100_bases
TCGGCCACGCCATCCGCCGGCGCCGGTGCCTAGACCTCGCGGGTTTTTCGACTAAAGTCGCCCGGCCCGGCCACCCACTC
GGCGGGCTGAGCACTCGAAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MFVLAMSACVLALVVWKGYDARRNALAQSETEMRNLAHSLAEHASHTIQSADVVMDDLVAFIRFQPFPDRARFDARLREV
SEKLPQIKELATLDAKGDVDHASVTPPPAINNADRDYFVYHRDHADPKLRITGPIVSRASGQPVIAVTRRLETADGGFAG
IVVATIESDYFTEFYKTFDLGAGSGITLSGGDGHILVRWPTAAGDLSKSRLFERMLPRSPVGYNLAISPFDGLQKYYAYE
QLSRYPLVVTVARTEVSVLADWREAVRSDAVVATAALACIVLLAAGLAVQLRNRERFERLLRERDARHRLIDANIGDVVV
VLDGRGVVTFVSMSIETVLGFRPEEVLGRVYFDMMHPDDVAGLQAMGKRLPDVPNGLRAEFRMERADGTMVWLEANFRFT
RQDGRPGRSIVCTLRDVTRRKEMEDEVEALNSRLAEMARTDALTGLPNRRALDDFIAGEFEASHDLSVLMIDVDDFKGFN
DRLGHHAGDDALRQLGRLLAGTAAGAGGFAARYGGEEFTIVLPGTGKAVAIAFAEELQAAIRALGIVNPSAARGRLTVSI
GIADKIASICDPATLLRCADIALYEAKRRGRDCSVAAPAFVGDAGSLVPDVATRTGTPA

Sequences:

>Translated_619_residues
MFVLAMSACVLALVVWKGYDARRNALAQSETEMRNLAHSLAEHASHTIQSADVVMDDLVAFIRFQPFPDRARFDARLREV
SEKLPQIKELATLDAKGDVDHASVTPPPAINNADRDYFVYHRDHADPKLRITGPIVSRASGQPVIAVTRRLETADGGFAG
IVVATIESDYFTEFYKTFDLGAGSGITLSGGDGHILVRWPTAAGDLSKSRLFERMLPRSPVGYNLAISPFDGLQKYYAYE
QLSRYPLVVTVARTEVSVLADWREAVRSDAVVATAALACIVLLAAGLAVQLRNRERFERLLRERDARHRLIDANIGDVVV
VLDGRGVVTFVSMSIETVLGFRPEEVLGRVYFDMMHPDDVAGLQAMGKRLPDVPNGLRAEFRMERADGTMVWLEANFRFT
RQDGRPGRSIVCTLRDVTRRKEMEDEVEALNSRLAEMARTDALTGLPNRRALDDFIAGEFEASHDLSVLMIDVDDFKGFN
DRLGHHAGDDALRQLGRLLAGTAAGAGGFAARYGGEEFTIVLPGTGKAVAIAFAEELQAAIRALGIVNPSAARGRLTVSI
GIADKIASICDPATLLRCADIALYEAKRRGRDCSVAAPAFVGDAGSLVPDVATRTGTPA
>Mature_619_residues
MFVLAMSACVLALVVWKGYDARRNALAQSETEMRNLAHSLAEHASHTIQSADVVMDDLVAFIRFQPFPDRARFDARLREV
SEKLPQIKELATLDAKGDVDHASVTPPPAINNADRDYFVYHRDHADPKLRITGPIVSRASGQPVIAVTRRLETADGGFAG
IVVATIESDYFTEFYKTFDLGAGSGITLSGGDGHILVRWPTAAGDLSKSRLFERMLPRSPVGYNLAISPFDGLQKYYAYE
QLSRYPLVVTVARTEVSVLADWREAVRSDAVVATAALACIVLLAAGLAVQLRNRERFERLLRERDARHRLIDANIGDVVV
VLDGRGVVTFVSMSIETVLGFRPEEVLGRVYFDMMHPDDVAGLQAMGKRLPDVPNGLRAEFRMERADGTMVWLEANFRFT
RQDGRPGRSIVCTLRDVTRRKEMEDEVEALNSRLAEMARTDALTGLPNRRALDDFIAGEFEASHDLSVLMIDVDDFKGFN
DRLGHHAGDDALRQLGRLLAGTAAGAGGFAARYGGEEFTIVLPGTGKAVAIAFAEELQAAIRALGIVNPSAARGRLTVSI
GIADKIASICDPATLLRCADIALYEAKRRGRDCSVAAPAFVGDAGSLVPDVATRTGTPA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=35.5670103092784, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=33.5365853658537, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1787541, Length=279, Percent_Identity=26.8817204301075, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI87081977, Length=193, Percent_Identity=33.6787564766839, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=35.8974358974359, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=32.0652173913043, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1788381, Length=307, Percent_Identity=27.0358306188925, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=30.3370786516854, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=31.25, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 67454; Mature: 67454

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVLAMSACVLALVVWKGYDARRNALAQSETEMRNLAHSLAEHASHTIQSADVVMDDLVA
CEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIRFQPFPDRARFDARLREVSEKLPQIKELATLDAKGDVDHASVTPPPAINNADRDYFVY
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
HRDHADPKLRITGPIVSRASGQPVIAVTRRLETADGGFAGIVVATIESDYFTEFYKTFDL
EECCCCCEEEEECCHHHCCCCCCEEEEEHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCC
GAGSGITLSGGDGHILVRWPTAAGDLSKSRLFERMLPRSPVGYNLAISPFDGLQKYYAYE
CCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHH
QLSRYPLVVTVARTEVSVLADWREAVRSDAVVATAALACIVLLAAGLAVQLRNRERFERL
HHCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHEEHHCHHHHHHH
LRERDARHRLIDANIGDVVVVLDGRGVVTFVSMSIETVLGFRPEEVLGRVYFDMMHPDDV
HHHHHHHHEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCHH
AGLQAMGKRLPDVPNGLRAEFRMERADGTMVWLEANFRFTRQDGRPGRSIVCTLRDVTRR
HHHHHHHHHCCCCCCCCHHHEEEECCCCEEEEEEECEEEEECCCCCCCEEEEEHHHHHHH
KEMEDEVEALNSRLAEMARTDALTGLPNRRALDDFIAGEFEASHDLSVLMIDVDDFKGFN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCH
DRLGHHAGDDALRQLGRLLAGTAAGAGGFAARYGGEEFTIVLPGTGKAVAIAFAEELQAA
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEECCCCCEEEEHHHHHHHHH
IRALGIVNPSAARGRLTVSIGIADKIASICDPATLLRCADIALYEAKRRGRDCSVAAPAF
HHHHCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCCE
VGDAGSLVPDVATRTGTPA
ECCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MFVLAMSACVLALVVWKGYDARRNALAQSETEMRNLAHSLAEHASHTIQSADVVMDDLVA
CEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIRFQPFPDRARFDARLREVSEKLPQIKELATLDAKGDVDHASVTPPPAINNADRDYFVY
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
HRDHADPKLRITGPIVSRASGQPVIAVTRRLETADGGFAGIVVATIESDYFTEFYKTFDL
EECCCCCEEEEECCHHHCCCCCCEEEEEHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCC
GAGSGITLSGGDGHILVRWPTAAGDLSKSRLFERMLPRSPVGYNLAISPFDGLQKYYAYE
CCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHH
QLSRYPLVVTVARTEVSVLADWREAVRSDAVVATAALACIVLLAAGLAVQLRNRERFERL
HHCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHEEHHCHHHHHHH
LRERDARHRLIDANIGDVVVVLDGRGVVTFVSMSIETVLGFRPEEVLGRVYFDMMHPDDV
HHHHHHHHEEEECCCCCEEEEECCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHCCCCHH
AGLQAMGKRLPDVPNGLRAEFRMERADGTMVWLEANFRFTRQDGRPGRSIVCTLRDVTRR
HHHHHHHHHCCCCCCCCHHHEEEECCCCEEEEEEECEEEEECCCCCCCEEEEEHHHHHHH
KEMEDEVEALNSRLAEMARTDALTGLPNRRALDDFIAGEFEASHDLSVLMIDVDDFKGFN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEHHCCCCH
DRLGHHAGDDALRQLGRLLAGTAAGAGGFAARYGGEEFTIVLPGTGKAVAIAFAEELQAA
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEEECCCCCEEEEHHHHHHHHH
IRALGIVNPSAARGRLTVSIGIADKIASICDPATLLRCADIALYEAKRRGRDCSVAAPAF
HHHHCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCCE
VGDAGSLVPDVATRTGTPA
ECCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]