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The map label for this gene is 86748998

Identifier: 86748998

GI number: 86748998

Start: 2137781

End: 2138662

Strand: Reverse

Name: 86748998

Synonym: RPB_1875

Alternate gene names: NA

Gene position: 2138662-2137781 (Counterclockwise)

Preceding gene: 86749000

Following gene: 86748995

Centisome position: 40.11

GC content: 64.51

Gene sequence:

>882_bases
ATGGCCCCGCGCCGCGCCTACTGGAAGGGCTCGCTGAAACTGTCCTTGGTCAGTTGTCCCGTGGCGCTGTATCCGGCCTC
GACCAGCGTCGAGAAGACCCGCTTTCACATGATCAACACCGAGACCGGCAACCGGCTGAAGCAGCAGATGATCGACGAGG
AAACCGGCGACGTGGTCGAAAAGCAGCAGAAGGGCCGCGGCTACGAAGTCCGCAAGGGCAAGTATGTCGCGATCGAGAAG
GACGAGCTCGAAGCGGTGCAGATCGAGAGTACCCACACCATCGAGATCGACAGCTTCGTGCCCGCCGACGAGATCGACAA
GCGCTACCTCGACCATCCGTACTACATCGCACCGGAGGGCAAGGCCGGGGTAGACGCCTTCGCCGTGATCCGCGACGCGA
TGAAGGACAAGGGCCGCGTCGCGCTGGGGCGGATCGTGCTGACCAACCGCGAGCATGTGATCGCGATCGAGCCGCTCGGC
AAGGGCCTGCTCGGCACCACGTTGCGTTATCCCTACGAACTGCGCGACGCCGAGGATTATTTCGACGGCATCAAGAGCCC
GAAAATCTCCAAGGACATGGTCGAACTCGCCGGGCACATCCTCGACACCAAGGCGGCGCATTTCGATCCGTCGACCTTCA
AGGACGACTACGAGACCGCGCTGAAGGCGCTGGTCAAGCGCAAGGCCGCCGGCAAGTCGATCAAGATCCCCGAGCCGCGC
GAGACGTCCGACAACGTCGTCAGCCTGATGGATGCGCTCAAGCAGAGCCTCGGCGGCAAGAAGGGCAGCAAGCCTGCGCC
GCGGCGCGCGGCGTCACGCGGCGGTAGCCGCGCGGCGAAGAAGGCCCACCGCTCGGCGGCGCGTTCACGCAAGGCGAGCT
GA

Upstream 100 bases:

>100_bases
TGTCGCCGAGCACCGGAACCAAAACCCCACCGCTGGGTTGAAGTTCCCGATCGGACGCCGCCGTCCGGTCGCCCCGCATC
CCCCGTCATCGGAGAGCATC

Downstream 100 bases:

>100_bases
GGCGCCTTTACCAATCGATCCATCGTTCGTCATTCCGGGGCGCGCGTAGCGCGAGCCCGGAATCCATAACCCCGGTGCTC
GGATTTGAGCGAGGAAGGCG

Product: Ku-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MAPRRAYWKGSLKLSLVSCPVALYPASTSVEKTRFHMINTETGNRLKQQMIDEETGDVVEKQQKGRGYEVRKGKYVAIEK
DELEAVQIESTHTIEIDSFVPADEIDKRYLDHPYYIAPEGKAGVDAFAVIRDAMKDKGRVALGRIVLTNREHVIAIEPLG
KGLLGTTLRYPYELRDAEDYFDGIKSPKISKDMVELAGHILDTKAAHFDPSTFKDDYETALKALVKRKAAGKSIKIPEPR
ETSDNVVSLMDALKQSLGGKKGSKPAPRRAASRGGSRAAKKAHRSAARSRKAS

Sequences:

>Translated_293_residues
MAPRRAYWKGSLKLSLVSCPVALYPASTSVEKTRFHMINTETGNRLKQQMIDEETGDVVEKQQKGRGYEVRKGKYVAIEK
DELEAVQIESTHTIEIDSFVPADEIDKRYLDHPYYIAPEGKAGVDAFAVIRDAMKDKGRVALGRIVLTNREHVIAIEPLG
KGLLGTTLRYPYELRDAEDYFDGIKSPKISKDMVELAGHILDTKAAHFDPSTFKDDYETALKALVKRKAAGKSIKIPEPR
ETSDNVVSLMDALKQSLGGKKGSKPAPRRAASRGGSRAAKKAHRSAARSRKAS
>Mature_292_residues
APRRAYWKGSLKLSLVSCPVALYPASTSVEKTRFHMINTETGNRLKQQMIDEETGDVVEKQQKGRGYEVRKGKYVAIEKD
ELEAVQIESTHTIEIDSFVPADEIDKRYLDHPYYIAPEGKAGVDAFAVIRDAMKDKGRVALGRIVLTNREHVIAIEPLGK
GLLGTTLRYPYELRDAEDYFDGIKSPKISKDMVELAGHILDTKAAHFDPSTFKDDYETALKALVKRKAAGKSIKIPEPRE
TSDNVVSLMDALKQSLGGKKGSKPAPRRAASRGGSRAAKKAHRSAARSRKAS

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 32454; Mature: 32323

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRRAYWKGSLKLSLVSCPVALYPASTSVEKTRFHMINTETGNRLKQQMIDEETGDVVE
CCCCCCEECCCEEEEEEECCEEEECCCCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHH
KQQKGRGYEVRKGKYVAIEKDELEAVQIESTHTIEIDSFVPADEIDKRYLDHPYYIAPEG
HHHCCCCEEECCCCEEEEECCCCCEEEECCCEEEEECCCCCHHHHHHHHCCCCEEECCCC
KAGVDAFAVIRDAMKDKGRVALGRIVLTNREHVIAIEPLGKGLLGTTLRYPYELRDAEDY
CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHCCCCCCCCHHHH
FDGIKSPKISKDMVELAGHILDTKAAHFDPSTFKDDYETALKALVKRKAAGKSIKIPEPR
HHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
ETSDNVVSLMDALKQSLGGKKGSKPAPRRAASRGGSRAAKKAHRSAARSRKAS
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APRRAYWKGSLKLSLVSCPVALYPASTSVEKTRFHMINTETGNRLKQQMIDEETGDVVE
CCCCCEECCCEEEEEEECCEEEECCCCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHH
KQQKGRGYEVRKGKYVAIEKDELEAVQIESTHTIEIDSFVPADEIDKRYLDHPYYIAPEG
HHHCCCCEEECCCCEEEEECCCCCEEEECCCEEEEECCCCCHHHHHHHHCCCCEEECCCC
KAGVDAFAVIRDAMKDKGRVALGRIVLTNREHVIAIEPLGKGLLGTTLRYPYELRDAEDY
CCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEECCCCCCHHHHHHCCCCCCCCHHHH
FDGIKSPKISKDMVELAGHILDTKAAHFDPSTFKDDYETALKALVKRKAAGKSIKIPEPR
HHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
ETSDNVVSLMDALKQSLGGKKGSKPAPRRAASRGGSRAAKKAHRSAARSRKAS
CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA