Definition | Rhodopseudomonas palustris HaA2, complete genome. |
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Accession | NC_007778 |
Length | 5,331,656 |
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The map label for this gene is braD [H]
Identifier: 86748785
GI number: 86748785
Start: 1890424
End: 1892337
Strand: Reverse
Name: braD [H]
Synonym: RPB_1662
Alternate gene names: 86748785
Gene position: 1892337-1890424 (Counterclockwise)
Preceding gene: 86748786
Following gene: 86748784
Centisome position: 35.49
GC content: 67.87
Gene sequence:
>1914_bases GTGGAACTGATATTGGTCCAGGCCCTCAGCGGTCTCGCCAGCGCCGCGTCGCTGTTCCTGGTCGCATCCGGGCTCTCGAT CATCTTCGGCGTCACGCGCATCGTGAACTTCGCGCACGGCGCGTTCTACATGCTCGGCGCCTATGTCGCCTTCACGCTGA CCGACCGCTTTTCCGGCCCGCTCGGCTTCTGGGGCGGACTGCTCGCCGCCAGCCTGATCGTGGCGGTGCTCGGCGCGCTG ATGGAGATGGTGCTGCTGCGCCGCATCTATCACGCGCCCGAGCTGTTCCAATTGCTCGCCACCTTCGGCGTGACGCTGAT GGTACAGGACATCGTGGTGCTGATCTGGGGCGCCGACGATCTGATGGGGCCGCGCGCGCCCGGCTTCGCCGGCGCCTTCA GCCTGTTCGGACGCCTGGTGCCGACCTACGACATCCTGCTGATCGTGCTCGGTCCGGTCGTACTCGGCGCATTGTGGCTG TTGTTCCACCGCACCCGCTGGGGCGTGCTGGTGCGCGCCGCGACACAGGACCGCGACATGGTCGCCTGCCTCGGCGTCAA TCAGAAGTGGCTGTTCACCAGCGTGTTCGCACTCGGCTGCTTCCTCGCCGCGCTCGGCGGCGCGCTGCAGATCCCGCGCA CCACCGTGACCCACTACATGGACCTGTCGATCATCGTCGAGGTGTTCGTGGTGGTGGTGATCGGCGGGCTCGGCTCGGTC ACCGGCGCCTTCATCGCCGCGGTTCTGGTGTCGGAATTGAACGCGCTCGGCATTCTGGTGCTGCCGAAGATCTCGCTGAT CGCCGTGTTCCTGGTGATGGCGGTGGTGCTGGTGGTGCGGCCCTACGGACTGCTCGGCAAGGCCGAACGCGGCGCCCGCG CCAGCGCCGGGATCTCGTTCCGGCCCTGGAAGCCGCTGTCGCAATGGGAGCGCATCGGCGCCGCGGTCGTCGTCGTCATC GCGGCCTGCCTGCCCTTGGTCGCCGGCAACTATCTGTTGAGCGTCGGCGCGGAGATCCTGGTGTTCGTGCTGTTCGCCGC CAGCCTGCACTTCATGATGACAGTGGGCGGGTTGGCATCGTTCGGCCACGCGGCGTTTTTCGGCCTCGGCGCCTATGGCG CGGCGTTCGCCGTCAAGTTTCTCGGCGCCCCGATGGAGGTCGCGCTGCTCGTCGGCCCGTTGTTCGGCCTGCTCGGCGCG GTGGTGTCGGGCTGGTTCTGCGTGCGGCTGTCGGGTGTGTATTTCGCCATGCTGACGCTGGCCTTCGCCCAGATCATCTG GTCGATCGCGTTCCAGTGGGTCGAGGTGACCGGCGGCGACAACGGCATTCTCGGGATCTGGCCCTCGGCCTGGGCGTCGA CCCCGCAAGGCTTCTTCTGGCTCACGCTCGGCGTGGTCGTCGCGGGCGTCGCACTGCTGCGGATGCTGGTGTTCTCGCCG TTCGGCTTCGGTCTGCGGGCGACGCGCGACAATACGCTGCGCTCGGAGGCGATCGGCATCGACCGCAAGTCGGTGCAGTG GGCCGCGCTGATCGTCGCCGGCACCTTCGCCGGCGTCGCCGGCGCGCTGTTCGCCTTCCTCAAGGGCTCGGTGTTTCCGG AATCGCTGGCGATCCCGATCTCGGTCGACGGATTGGTGATGGTGCTGCTCGGCGGCATCGAAACGGTGTCGGGCGCGGTG GTCGGCGCGATCGTCTACAAGGCGCTGGCGATCTGGCTGATGAGCCAGACCGACCTCTCCAAGCTCGTGCTCGGCGCGAT CATCGTGCTGCTGGTGGTGGCTGCGCCCAAGGGCATCGTCGGTTTCATCGAGGATTGGCGGCATCGCCGGCCGCCGGCGC CGAACGGCGCCGGGCCGAAGCCGGCCGGCAAATCCGACGCGCTCGGGATCGCCAAGATGGAGGCCGCCGAATGA
Upstream 100 bases:
>100_bases CGCCCGCACGGCTGCTTCCTCTCTTGCGAACGTCCGCCGCTGACATCAGCGGCGGACACCAGACCCAACCCGCTCCTCCT CCAGCACGAAAGGCGTCGCC
Downstream 100 bases:
>100_bases CCGCGTTGCTCGAAGTCAAAGGACTGGTGAAGTCCTACGCCGGAGTTCATGCCGTGCGCGACGTCAGCTTCGCCGTGCGC CCCGGCGAAATCCTGGCGCT
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 637; Mature: 637
Protein sequence:
>637_residues MELILVQALSGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTDRFSGPLGFWGGLLAASLIVAVLGAL MEMVLLRRIYHAPELFQLLATFGVTLMVQDIVVLIWGADDLMGPRAPGFAGAFSLFGRLVPTYDILLIVLGPVVLGALWL LFHRTRWGVLVRAATQDRDMVACLGVNQKWLFTSVFALGCFLAALGGALQIPRTTVTHYMDLSIIVEVFVVVVIGGLGSV TGAFIAAVLVSELNALGILVLPKISLIAVFLVMAVVLVVRPYGLLGKAERGARASAGISFRPWKPLSQWERIGAAVVVVI AACLPLVAGNYLLSVGAEILVFVLFAASLHFMMTVGGLASFGHAAFFGLGAYGAAFAVKFLGAPMEVALLVGPLFGLLGA VVSGWFCVRLSGVYFAMLTLAFAQIIWSIAFQWVEVTGGDNGILGIWPSAWASTPQGFFWLTLGVVVAGVALLRMLVFSP FGFGLRATRDNTLRSEAIGIDRKSVQWAALIVAGTFAGVAGALFAFLKGSVFPESLAIPISVDGLVMVLLGGIETVSGAV VGAIVYKALAIWLMSQTDLSKLVLGAIIVLLVVAAPKGIVGFIEDWRHRRPPAPNGAGPKPAGKSDALGIAKMEAAE
Sequences:
>Translated_637_residues MELILVQALSGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTDRFSGPLGFWGGLLAASLIVAVLGAL MEMVLLRRIYHAPELFQLLATFGVTLMVQDIVVLIWGADDLMGPRAPGFAGAFSLFGRLVPTYDILLIVLGPVVLGALWL LFHRTRWGVLVRAATQDRDMVACLGVNQKWLFTSVFALGCFLAALGGALQIPRTTVTHYMDLSIIVEVFVVVVIGGLGSV TGAFIAAVLVSELNALGILVLPKISLIAVFLVMAVVLVVRPYGLLGKAERGARASAGISFRPWKPLSQWERIGAAVVVVI AACLPLVAGNYLLSVGAEILVFVLFAASLHFMMTVGGLASFGHAAFFGLGAYGAAFAVKFLGAPMEVALLVGPLFGLLGA VVSGWFCVRLSGVYFAMLTLAFAQIIWSIAFQWVEVTGGDNGILGIWPSAWASTPQGFFWLTLGVVVAGVALLRMLVFSP FGFGLRATRDNTLRSEAIGIDRKSVQWAALIVAGTFAGVAGALFAFLKGSVFPESLAIPISVDGLVMVLLGGIETVSGAV VGAIVYKALAIWLMSQTDLSKLVLGAIIVLLVVAAPKGIVGFIEDWRHRRPPAPNGAGPKPAGKSDALGIAKMEAAE >Mature_637_residues MELILVQALSGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTDRFSGPLGFWGGLLAASLIVAVLGAL MEMVLLRRIYHAPELFQLLATFGVTLMVQDIVVLIWGADDLMGPRAPGFAGAFSLFGRLVPTYDILLIVLGPVVLGALWL LFHRTRWGVLVRAATQDRDMVACLGVNQKWLFTSVFALGCFLAALGGALQIPRTTVTHYMDLSIIVEVFVVVVIGGLGSV TGAFIAAVLVSELNALGILVLPKISLIAVFLVMAVVLVVRPYGLLGKAERGARASAGISFRPWKPLSQWERIGAAVVVVI AACLPLVAGNYLLSVGAEILVFVLFAASLHFMMTVGGLASFGHAAFFGLGAYGAAFAVKFLGAPMEVALLVGPLFGLLGA VVSGWFCVRLSGVYFAMLTLAFAQIIWSIAFQWVEVTGGDNGILGIWPSAWASTPQGFFWLTLGVVVAGVALLRMLVFSP FGFGLRATRDNTLRSEAIGIDRKSVQWAALIVAGTFAGVAGALFAFLKGSVFPESLAIPISVDGLVMVLLGGIETVSGAV VGAIVYKALAIWLMSQTDLSKLVLGAIIVLLVVAAPKGIVGFIEDWRHRRPPAPNGAGPKPAGKSDALGIAKMEAAE
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=296, Percent_Identity=26.6891891891892, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1789865, Length=306, Percent_Identity=25.1633986928105, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 67007; Mature: 67007
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELILVQALSGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTDRFSGP CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LGFWGGLLAASLIVAVLGALMEMVLLRRIYHAPELFQLLATFGVTLMVQDIVVLIWGADD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCHH LMGPRAPGFAGAFSLFGRLVPTYDILLIVLGPVVLGALWLLFHRTRWGVLVRAATQDRDM HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCE VACLGVNQKWLFTSVFALGCFLAALGGALQIPRTTVTHYMDLSIIVEVFVVVVIGGLGSV EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH TGAFIAAVLVSELNALGILVLPKISLIAVFLVMAVVLVVRPYGLLGKAERGARASAGISF HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC RPWKPLSQWERIGAAVVVVIAACLPLVAGNYLLSVGAEILVFVLFAASLHFMMTVGGLAS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGHAAFFGLGAYGAAFAVKFLGAPMEVALLVGPLFGLLGAVVSGWFCVRLSGVYFAMLTL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAQIIWSIAFQWVEVTGGDNGILGIWPSAWASTPQGFFWLTLGVVVAGVALLRMLVFSP HHHHHHHHHHHHHHEEECCCCCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC FGFGLRATRDNTLRSEAIGIDRKSVQWAALIVAGTFAGVAGALFAFLKGSVFPESLAIPI CCCCCEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE SVDGLVMVLLGGIETVSGAVVGAIVYKALAIWLMSQTDLSKLVLGAIIVLLVVAAPKGIV CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH GFIEDWRHRRPPAPNGAGPKPAGKSDALGIAKMEAAE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCC >Mature Secondary Structure MELILVQALSGLASAASLFLVASGLSIIFGVTRIVNFAHGAFYMLGAYVAFTLTDRFSGP CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LGFWGGLLAASLIVAVLGALMEMVLLRRIYHAPELFQLLATFGVTLMVQDIVVLIWGADD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCHH LMGPRAPGFAGAFSLFGRLVPTYDILLIVLGPVVLGALWLLFHRTRWGVLVRAATQDRDM HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCE VACLGVNQKWLFTSVFALGCFLAALGGALQIPRTTVTHYMDLSIIVEVFVVVVIGGLGSV EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH TGAFIAAVLVSELNALGILVLPKISLIAVFLVMAVVLVVRPYGLLGKAERGARASAGISF HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC RPWKPLSQWERIGAAVVVVIAACLPLVAGNYLLSVGAEILVFVLFAASLHFMMTVGGLAS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGHAAFFGLGAYGAAFAVKFLGAPMEVALLVGPLFGLLGAVVSGWFCVRLSGVYFAMLTL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAQIIWSIAFQWVEVTGGDNGILGIWPSAWASTPQGFFWLTLGVVVAGVALLRMLVFSP HHHHHHHHHHHHHHEEECCCCCEEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC FGFGLRATRDNTLRSEAIGIDRKSVQWAALIVAGTFAGVAGALFAFLKGSVFPESLAIPI CCCCCEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE SVDGLVMVLLGGIETVSGAVVGAIVYKALAIWLMSQTDLSKLVLGAIIVLLVVAAPKGIV CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH GFIEDWRHRRPPAPNGAGPKPAGKSDALGIAKMEAAE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]