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The map label for this gene is yvoA [H]

Identifier: 86748244

GI number: 86748244

Start: 1288356

End: 1289129

Strand: Reverse

Name: yvoA [H]

Synonym: RPB_1119

Alternate gene names: 86748244

Gene position: 1289129-1288356 (Counterclockwise)

Preceding gene: 86748251

Following gene: 86748242

Centisome position: 24.18

GC content: 62.66

Gene sequence:

>774_bases
ATGAGGCGGCCGGTGACTGACGCGACAGCAGAAACTGAGGACATCCGGCGGCGGCTGAACGAGACGCAGCAGCCGCTCTA
CGTGTCTCTGTCCAACCTGCTGGAGACCGACATCTACGAGGGCCGCTGGCCGGCCGGCGCTCAGTTGCCGACGATCGCCG
AGCTGTCGGAGCGCTACGACGTCGCCCGCGTGACCATCCGTCAAGCGCTCGGCGTGCTCTCCGCCAAGGGCCTGATCATC
CCGATCCAGGGCAAGGGCACGTTCGTCGCCGACCAGGTCAAGCCGCGGAAGACGATCTCGCTGGATTCCGACTGGAACTA
TCTGCTCGCGACGCTGGACGGCAACAGCGCGGAATCGCTCGACGTGATCAAGAGCTGCGCGCTGCCGTCCACCGTCGACG
GCCCGGAGAAGCATTTCAAGGACTACCGCTACATGAAGCGGATCCATCGCGCCTATGACGAGCCCTATTGCGTCAACGAC
GTGTATCTGGCCAACGACTACTACAATCGCGATCCCGAGACCTTCGATCGCCAGATGATCATCCCGCATTTGACCAGGGT
CTCGCGGGCCAAGCTGAAGCGCATGAAGCAATCGGTCCGCATCACCTCGGCGGATCTGGCCGTCGCCAAATACATGAACA
TTCCGGTCAACGCCCCGGTCGCGGAAGTACGCCGGCTGATCACCAACCGCAAAGACGAGATCGTGTTCTTCTCGACCGGC
CTCTACCGCGGCGACCTCGTGGTGTTCAACACCACGATCGACGTGCCAGGCTGA

Upstream 100 bases:

>100_bases
ACTAGTGTGCTGGTTGACCAGCACACAAGATCAATTTTCAGGCGGATGAGTTCCGCTTTTTGGGCGGCGGCACGCCGGCT
TTGCTCGGGTGTGCGGAAAA

Downstream 100 bases:

>100_bases
AGCCGCTTACGGCTTCAGCGTCTCCAGAAACCGCACCGGCTCGCCGGTCGCGGGCGTTGCGAGTTCGCCCTGCCACATCA
CCCTGGCGCCGCGCACGAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRRPVTDATAETEDIRRRLNETQQPLYVSLSNLLETDIYEGRWPAGAQLPTIAELSERYDVARVTIRQALGVLSAKGLII
PIQGKGTFVADQVKPRKTISLDSDWNYLLATLDGNSAESLDVIKSCALPSTVDGPEKHFKDYRYMKRIHRAYDEPYCVND
VYLANDYYNRDPETFDRQMIIPHLTRVSRAKLKRMKQSVRITSADLAVAKYMNIPVNAPVAEVRRLITNRKDEIVFFSTG
LYRGDLVVFNTTIDVPG

Sequences:

>Translated_257_residues
MRRPVTDATAETEDIRRRLNETQQPLYVSLSNLLETDIYEGRWPAGAQLPTIAELSERYDVARVTIRQALGVLSAKGLII
PIQGKGTFVADQVKPRKTISLDSDWNYLLATLDGNSAESLDVIKSCALPSTVDGPEKHFKDYRYMKRIHRAYDEPYCVND
VYLANDYYNRDPETFDRQMIIPHLTRVSRAKLKRMKQSVRITSADLAVAKYMNIPVNAPVAEVRRLITNRKDEIVFFSTG
LYRGDLVVFNTTIDVPG
>Mature_257_residues
MRRPVTDATAETEDIRRRLNETQQPLYVSLSNLLETDIYEGRWPAGAQLPTIAELSERYDVARVTIRQALGVLSAKGLII
PIQGKGTFVADQVKPRKTISLDSDWNYLLATLDGNSAESLDVIKSCALPSTVDGPEKHFKDYRYMKRIHRAYDEPYCVND
VYLANDYYNRDPETFDRQMIIPHLTRVSRAKLKRMKQSVRITSADLAVAKYMNIPVNAPVAEVRRLITNRKDEIVFFSTG
LYRGDLVVFNTTIDVPG

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=71, Percent_Identity=46.4788732394366, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29244; Mature: 29244

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRPVTDATAETEDIRRRLNETQQPLYVSLSNLLETDIYEGRWPAGAQLPTIAELSERYD
CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
VARVTIRQALGVLSAKGLIIPIQGKGTFVADQVKPRKTISLDSDWNYLLATLDGNSAESL
HHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCEEEEECCCCCEEEEEECCCCCHHH
DVIKSCALPSTVDGPEKHFKDYRYMKRIHRAYDEPYCVNDVYLANDYYNRDPETFDRQMI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCCCCCHHHHHHHH
IPHLTRVSRAKLKRMKQSVRITSADLAVAKYMNIPVNAPVAEVRRLITNRKDEIVFFSTG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECC
LYRGDLVVFNTTIDVPG
CEECCEEEEEEEECCCC
>Mature Secondary Structure
MRRPVTDATAETEDIRRRLNETQQPLYVSLSNLLETDIYEGRWPAGAQLPTIAELSERYD
CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
VARVTIRQALGVLSAKGLIIPIQGKGTFVADQVKPRKTISLDSDWNYLLATLDGNSAESL
HHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCEEEEECCCCCEEEEEECCCCCHHH
DVIKSCALPSTVDGPEKHFKDYRYMKRIHRAYDEPYCVNDVYLANDYYNRDPETFDRQMI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCCCCCHHHHHHHH
IPHLTRVSRAKLKRMKQSVRITSADLAVAKYMNIPVNAPVAEVRRLITNRKDEIVFFSTG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEECC
LYRGDLVVFNTTIDVPG
CEECCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]