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The map label for this gene is yddV [C]

Identifier: 86748153

GI number: 86748153

Start: 1179777

End: 1181042

Strand: Reverse

Name: yddV [C]

Synonym: RPB_1028

Alternate gene names: 86748153

Gene position: 1181042-1179777 (Counterclockwise)

Preceding gene: 86748154

Following gene: 86748148

Centisome position: 22.15

GC content: 68.64

Gene sequence:

>1266_bases
TTGCTCGCAACAGGTACTGAAGAACCGCGAAACGTTCACCCGAGCGCGACGCGGCGCCGCCTCGAGATCAAGATGACGCT
GAGCAGCAAGGTCGCGAACACCGTCTACATCGAATTCGTTCGACTGCTGTACACGGCGCGCTGGCCCATCGCGGTGGTCG
GCGCCGCGATCCTGATGGTGGGGCTGGCCGTCGGCCGGCAGACCGGCGATCTCGTCGCCCCGGCGATCGGCATCATCGGC
ATGCTGGTGACGGTCGGGCGGCTCGCGCTGTGCGTCGCCTTCGATCGCACCGTGCAGCGCCGGCCGCTCGATCTCGCCTC
CGCCAAAGTGTGGGAGCGGCGCCTCGCCATCGGCGTGATCGCCACCGGCGTCTGTGTCGGCGGCTTTGCGGTGCGCTGCT
TCCTGCTGCCCGATCTGACCGCCCATATGGTCGCCGGCGGGCTCGTGTTCGGCTACTGCGCCGGGACGACGACGCGCTTT
TCGATCCGTCCATGGATCGTCAAAGCCAGCCTCGGCGTCTCCGTCATCCCGGCGGTGTCGGCGGCATTGTGGAATTTCGA
TCTGATGCACGCCGCGCAGGCGCTGCTGTTCCTGATCTTCTTCTTCGGCGGCTTCGAGCTGATCGTCTACATCCACGACA
CCACCCGGGAGCAATTGACGTTGCGCGCCGAGGCCGCGCATCTGGCCCGCGCCGACGTGCTCACCAAACTGCCGAACCGG
CTGCGCCTCGCCGAGCATTTCGAAGAGACCGCGGCCCGGCTGCGGCGGCACAAGGAAGGCTTCGCCGTGATCGGCGTCGA
TCTGGATTTCTTCAAGGAGGCCAACGACCGGTTCGGCCACGCCACGGGCGACGAATTGCTCCGGATGGTCGCGACACGGC
TGACCGGACTGTTGCGGGAGCACGACCTCGCCGCCCGGATCGGCGGCGACGAATTCGTCGTGATCCAGGCCGACGTCTCC
GACCGCCGCGACGTCGAACGGCTGTGCCGCCGCATCGTCGAGACGCTGTCCGCCCCCTATGCGATCGACGGCCACAGCAT
CACGCTGGGCGCCAGCCTCGGCACCGCGATCGCGCCCGACGACGGCACCAGCCTCGACGATCTGCTCGCCAAGGCGGACG
CGGCGCTGTACGCGGTCAAACGCAACCGCTCCGGGCGAACATCGGGCGCTGCAGCCGCACGCGACGCCGCTCCGCTCGCG
CCGGATGTGCCGGACGGCGCAGAGCCGACGCGCGGAGCGCCGCAGCCGCTGCAATTCCACGCCTGA

Upstream 100 bases:

>100_bases
CCGTGCAGCGCGATTTGCGGCATCGGCTTAAACGGCGATTCACCACTTTTCGGCACGCGCATCGGACTTCACCGGGGATT
CAGCTTTCGTCGAATAGGTC

Downstream 100 bases:

>100_bases
TCAGGCCGCCCGGTCGCCTTCGACCAGCCGCCAGACGTGGCGGGCGATCATCAGGTCCTCGTCGGTCGGGATCACCCAGA
CCGAGACCTTGCTGTCGGCG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MLATGTEEPRNVHPSATRRRLEIKMTLSSKVANTVYIEFVRLLYTARWPIAVVGAAILMVGLAVGRQTGDLVAPAIGIIG
MLVTVGRLALCVAFDRTVQRRPLDLASAKVWERRLAIGVIATGVCVGGFAVRCFLLPDLTAHMVAGGLVFGYCAGTTTRF
SIRPWIVKASLGVSVIPAVSAALWNFDLMHAAQALLFLIFFFGGFELIVYIHDTTREQLTLRAEAAHLARADVLTKLPNR
LRLAEHFEETAARLRRHKEGFAVIGVDLDFFKEANDRFGHATGDELLRMVATRLTGLLREHDLAARIGGDEFVVIQADVS
DRRDVERLCRRIVETLSAPYAIDGHSITLGASLGTAIAPDDGTSLDDLLAKADAALYAVKRNRSGRTSGAAAARDAAPLA
PDVPDGAEPTRGAPQPLQFHA

Sequences:

>Translated_421_residues
MLATGTEEPRNVHPSATRRRLEIKMTLSSKVANTVYIEFVRLLYTARWPIAVVGAAILMVGLAVGRQTGDLVAPAIGIIG
MLVTVGRLALCVAFDRTVQRRPLDLASAKVWERRLAIGVIATGVCVGGFAVRCFLLPDLTAHMVAGGLVFGYCAGTTTRF
SIRPWIVKASLGVSVIPAVSAALWNFDLMHAAQALLFLIFFFGGFELIVYIHDTTREQLTLRAEAAHLARADVLTKLPNR
LRLAEHFEETAARLRRHKEGFAVIGVDLDFFKEANDRFGHATGDELLRMVATRLTGLLREHDLAARIGGDEFVVIQADVS
DRRDVERLCRRIVETLSAPYAIDGHSITLGASLGTAIAPDDGTSLDDLLAKADAALYAVKRNRSGRTSGAAAARDAAPLA
PDVPDGAEPTRGAPQPLQFHA
>Mature_421_residues
MLATGTEEPRNVHPSATRRRLEIKMTLSSKVANTVYIEFVRLLYTARWPIAVVGAAILMVGLAVGRQTGDLVAPAIGIIG
MLVTVGRLALCVAFDRTVQRRPLDLASAKVWERRLAIGVIATGVCVGGFAVRCFLLPDLTAHMVAGGLVFGYCAGTTTRF
SIRPWIVKASLGVSVIPAVSAALWNFDLMHAAQALLFLIFFFGGFELIVYIHDTTREQLTLRAEAAHLARADVLTKLPNR
LRLAEHFEETAARLRRHKEGFAVIGVDLDFFKEANDRFGHATGDELLRMVATRLTGLLREHDLAARIGGDEFVVIQADVS
DRRDVERLCRRIVETLSAPYAIDGHSITLGASLGTAIAPDDGTSLDDLLAKADAALYAVKRNRSGRTSGAAAARDAAPLA
PDVPDGAEPTRGAPQPLQFHA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=192, Percent_Identity=34.8958333333333, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788381, Length=201, Percent_Identity=30.8457711442786, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=159, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=37.7906976744186, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=35.0877192982456, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=33.7142857142857, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=29.8780487804878, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787262, Length=180, Percent_Identity=29.4444444444444, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081974, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=35.5421686746988, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 45489; Mature: 45489

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATGTEEPRNVHPSATRRRLEIKMTLSSKVANTVYIEFVRLLYTARWPIAVVGAAILMV
CCCCCCCCCCCCCCHHHCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GLAVGRQTGDLVAPAIGIIGMLVTVGRLALCVAFDRTVQRRPLDLASAKVWERRLAIGVI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ATGVCVGGFAVRCFLLPDLTAHMVAGGLVFGYCAGTTTRFSIRPWIVKASLGVSVIPAVS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCCCEEEEECCEEEEECCCCHHHHHHH
AALWNFDLMHAAQALLFLIFFFGGFELIVYIHDTTREQLTLRAEAAHLARADVLTKLPNR
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHH
LRLAEHFEETAARLRRHKEGFAVIGVDLDFFKEANDRFGHATGDELLRMVATRLTGLLRE
HHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
HDLAARIGGDEFVVIQADVSDRRDVERLCRRIVETLSAPYAIDGHSITLGASLGTAIAPD
HHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCC
DGTSLDDLLAKADAALYAVKRNRSGRTSGAAAARDAAPLAPDVPDGAEPTRGAPQPLQFH
CCCCHHHHHHHHHHHHEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
A
C
>Mature Secondary Structure
MLATGTEEPRNVHPSATRRRLEIKMTLSSKVANTVYIEFVRLLYTARWPIAVVGAAILMV
CCCCCCCCCCCCCCHHHCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
GLAVGRQTGDLVAPAIGIIGMLVTVGRLALCVAFDRTVQRRPLDLASAKVWERRLAIGVI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ATGVCVGGFAVRCFLLPDLTAHMVAGGLVFGYCAGTTTRFSIRPWIVKASLGVSVIPAVS
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCCCEEEEECCEEEEECCCCHHHHHHH
AALWNFDLMHAAQALLFLIFFFGGFELIVYIHDTTREQLTLRAEAAHLARADVLTKLPNR
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHH
LRLAEHFEETAARLRRHKEGFAVIGVDLDFFKEANDRFGHATGDELLRMVATRLTGLLRE
HHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
HDLAARIGGDEFVVIQADVSDRRDVERLCRRIVETLSAPYAIDGHSITLGASLGTAIAPD
HHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCC
DGTSLDDLLAKADAALYAVKRNRSGRTSGAAAARDAAPLAPDVPDGAEPTRGAPQPLQFH
CCCCHHHHHHHHHHHHEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]