| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is cbbP [H]
Identifier: 86748073
GI number: 86748073
Start: 1096004
End: 1096879
Strand: Direct
Name: cbbP [H]
Synonym: RPB_0948
Alternate gene names: 86748073
Gene position: 1096004-1096879 (Clockwise)
Preceding gene: 86748072
Following gene: 86748074
Centisome position: 20.56
GC content: 61.42
Gene sequence:
>876_bases ATGTCCCGTAAGCATCCGATCATCTCGATCACCGGCTCCTCCGGCGCCGGAACGACCTCCGTCAAGCGGACCTTCGAGCA GATCTTCCGTCGCGAGAACGTCAACGCCGCCTACATCGAAGGCGATGCGTTTCACCGCTACAACCGCGTCGACATGCGCA CCAAGATGGCCGAGGAGGCCGCGCTGGGAAACCGGCACTTCAGCCATTTCAGCCCCGAGACCAATCTGTTCGAGGAACTG GAGACGACGTTCCGCGACTACGCCACCACCGGCACCGGCAAGACCCGCACCTACGTCCATGACGACAAGGAAGCCGCGGT TCACGGCGTTGCCCCCGGCAATTTCACCGACTGGCACTCGCTGCCGGCGGATTCCGATCTGCTGTTCTACGAAGGTCTGC ACGGCGCGGTGATCACCGAGAAAGTCAACGTTGCGCAACACGCCGACCTCAAGATCGGTGTGGTGCCGGTGATCAATCTG GAGTGGATCCAGAAGCTGCACCGCGACCGCGCCGATCGCGGCTACACCACCGAGGTGGTGACCGACACCATCCTTCGCCG GATGCCGGACTACGTGCACTACATCGTGCCGCAATTCGCCGAGACCGACATCAATTTCCAGCGCGTGCCGACGGTCGATA CGTCGAACCCGTTCATCGCGCGGTGGATCCCGACTGCCGACGAGTCGATGGTGGTGATCCGCTTCAAGGACCCGCGCGGA ATCGATTTCGCCTATCTGCTGTCGATGATCCAGGGCAGCTTCATGTCGCGCGCCAACTCGATCGTAATCCATGGCGCCAA GCTCGATCTCGCCATGCAGCTCATCCTGACGCCGTTGATCATGCAACTGGTCGATCGCAAGCGCGGCGTGAAATAA
Upstream 100 bases:
>100_bases ACCTCGATCCGGCCGCGGCCTCACGCACAGCGCCGTTGTTCGGGCGCCGCGGCCTGTTCCGGACCTGAACCAAGTCCCCA ATTGTTGGAAATGTGAATCC
Downstream 100 bases:
>100_bases ACATGCGTCATCATTCCACTTCCGGGAGGCCGGCTTGAATATCCCCGCACGCGAACTCCACGACCAGGTCAGCCACGCCG AGATGGCCAATGCGATCCGC
Product: phosphoribulokinase
Products: NA
Alternate protein names: PRK; PRKase; Phosphopentokinase [H]
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MSRKHPIISITGSSGAGTTSVKRTFEQIFRRENVNAAYIEGDAFHRYNRVDMRTKMAEEAALGNRHFSHFSPETNLFEEL ETTFRDYATTGTGKTRTYVHDDKEAAVHGVAPGNFTDWHSLPADSDLLFYEGLHGAVITEKVNVAQHADLKIGVVPVINL EWIQKLHRDRADRGYTTEVVTDTILRRMPDYVHYIVPQFAETDINFQRVPTVDTSNPFIARWIPTADESMVVIRFKDPRG IDFAYLLSMIQGSFMSRANSIVIHGAKLDLAMQLILTPLIMQLVDRKRGVK
Sequences:
>Translated_291_residues MSRKHPIISITGSSGAGTTSVKRTFEQIFRRENVNAAYIEGDAFHRYNRVDMRTKMAEEAALGNRHFSHFSPETNLFEEL ETTFRDYATTGTGKTRTYVHDDKEAAVHGVAPGNFTDWHSLPADSDLLFYEGLHGAVITEKVNVAQHADLKIGVVPVINL EWIQKLHRDRADRGYTTEVVTDTILRRMPDYVHYIVPQFAETDINFQRVPTVDTSNPFIARWIPTADESMVVIRFKDPRG IDFAYLLSMIQGSFMSRANSIVIHGAKLDLAMQLILTPLIMQLVDRKRGVK >Mature_290_residues SRKHPIISITGSSGAGTTSVKRTFEQIFRRENVNAAYIEGDAFHRYNRVDMRTKMAEEAALGNRHFSHFSPETNLFEELE TTFRDYATTGTGKTRTYVHDDKEAAVHGVAPGNFTDWHSLPADSDLLFYEGLHGAVITEKVNVAQHADLKIGVVPVINLE WIQKLHRDRADRGYTTEVVTDTILRRMPDYVHYIVPQFAETDINFQRVPTVDTSNPFIARWIPTADESMVVIRFKDPRGI DFAYLLSMIQGSFMSRANSIVIHGAKLDLAMQLILTPLIMQLVDRKRGVK
Specific function: Unknown
COG id: COG3954
COG function: function code C; Phosphoribulokinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoribulokinase family [H]
Homologues:
Organism=Escherichia coli, GI2367214, Length=290, Percent_Identity=54.1379310344828, Blast_Score=335, Evalue=3e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006082 - InterPro: IPR006083 [H]
Pfam domain/function: PF00485 PRK [H]
EC number: =2.7.1.19 [H]
Molecular weight: Translated: 33011; Mature: 32880
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS00567 PHOSPHORIBULOKINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRKHPIISITGSSGAGTTSVKRTFEQIFRRENVNAAYIEGDAFHRYNRVDMRTKMAEEA CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCHHHHHHHHHHHH ALGNRHFSHFSPETNLFEELETTFRDYATTGTGKTRTYVHDDKEAAVHGVAPGNFTDWHS HHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHEEECCCCCCCCCCCC LPADSDLLFYEGLHGAVITEKVNVAQHADLKIGVVPVINLEWIQKLHRDRADRGYTTEVV CCCCCCEEEECCCCCEEEEEECCHHHCCCEEEEEEEEECHHHHHHHHHHHCCCCCCHHHH TDTILRRMPDYVHYIVPQFAETDINFQRVPTVDTSNPFIARWIPTADESMVVIRFKDPRG HHHHHHHCHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCCCCEEEEEECCCCC IDFAYLLSMIQGSFMSRANSIVIHGAKLDLAMQLILTPLIMQLVDRKRGVK CCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SRKHPIISITGSSGAGTTSVKRTFEQIFRRENVNAAYIEGDAFHRYNRVDMRTKMAEEA CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCHHHHHHHHHHHH ALGNRHFSHFSPETNLFEELETTFRDYATTGTGKTRTYVHDDKEAAVHGVAPGNFTDWHS HHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHEEECCCCCCCCCCCC LPADSDLLFYEGLHGAVITEKVNVAQHADLKIGVVPVINLEWIQKLHRDRADRGYTTEVV CCCCCCEEEECCCCCEEEEEECCHHHCCCEEEEEEEEECHHHHHHHHHHHCCCCCCHHHH TDTILRRMPDYVHYIVPQFAETDINFQRVPTVDTSNPFIARWIPTADESMVVIRFKDPRG HHHHHHHCHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCCCCEEEEEECCCCC IDFAYLLSMIQGSFMSRANSIVIHGAKLDLAMQLILTPLIMQLVDRKRGVK CCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA