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The map label for this gene is yfdE [H]

Identifier: 86748036

GI number: 86748036

Start: 1047958

End: 1049073

Strand: Reverse

Name: yfdE [H]

Synonym: RPB_0910

Alternate gene names: 86748036

Gene position: 1049073-1047958 (Counterclockwise)

Preceding gene: 86748037

Following gene: 86748028

Centisome position: 19.68

GC content: 68.55

Gene sequence:

>1116_bases
GTGCAAGACACAGCGACCGCCTCCAAGAAGCCGCAGACCTCCGGCCGCGCCAGCGGACCGCTCGCCGGCATCCGCATCGT
CGAATTCGCCGGCATCGGCCCGGGGCCGTTCGGCGCGATGCTGCTGGCCGACATGGGCGCCGAAGTGATCACGCTGACGC
GCGCCGGCCAGACGCCGCGCGGCGCCGCCGCCCGCGGCCGCAAGATCGTCGTAGTCGACCTCAAGGACAAGGCGTCGCTC
GACGGCGTGCTGGCGCTGCTCGACAATGCCGACGCGCTGATCGAGGGCTATCGCCCCGGCGTGATGGAGCGGCTCGGCCT
CGGCCCGGATGTGGTGCTCGGCCGCAATCCGAAGCTGGTCTACGGCCGCATGACCGGCTGGGGCCAGACCGGCCCGCTGG
CGCAGGCCGCCGGCCACGACATCAACTACATCTCGATCACCGGCGCGCTGGCGGCGATCGGCCCGGCCGAGAAGCCGGTG
CCGCCGCTCAATCTGGTCGGCGATTTCGGCGGCGGCTCGATGTATCTCGTCGTCGGGATGCTCGCCGCGCTGCTCGAGGC
CAAGAGCTCCGGCAAGGGCCAGGTGGTCGACGCCGCGATGTGCGACGGCGCCGCCTCGCTGATCACGATGTTCTTCGACA
TGACCTCGGCCGGGCGCTGGCAGGAAGGCCGCGAGAGCAACATGCTCGACGGCGGCGCGCATTTCTACGGCGTGTACGAA
TGCAAGGACGGGCATTTCGTCTCGATCGGCTCGATCGAGCCGCAGTTCTACAAGCTGTTGCGCGAACTCGCCGGCCTGAC
CGATCCGCAATATGACGGCCAGATGGATCCGAAGAACTGGCCCGCCCTGAAAGAGAAGCTGACCGCGGTGTTCAAGACCA
GGACGCGCGACGAATGGTGCCAACTGATGGAAGGCACCGACGTCTGCTTCGCCCCGGTGCTGACGATGGCGGAAGCGACG
CAACATCCGCACATGGTGGCGCGCGAAGTGTTCATCACCCACGAGGGCCACACCCAGCCGGCGCCGGCGCCGCGGTTCTC
CCGCACGCCGTCGTCGGTGCGCACGCCGCTGCAGGCGGATCTGGTAGGATTGGCGAAAGAATGGGGCGGGAAGTAA

Upstream 100 bases:

>100_bases
ATGGGGCGAAAAGTCACTTGCCCGAAGACCGCCAGCCATGATGATTGACCGCAACCACAACCGCTCCGCGCGCTGCGGAC
AACAACAATGGACACCCAAG

Downstream 100 bases:

>100_bases
CGCCCAACCGCCGTCATTGCGAGGAGCGAAAGCGACGAAGCAATCCAACGCCTCAGCCGGGGCATGGATTGCTTCGCTTC
GCTCGCAATGACGCCTGAAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MQDTATASKKPQTSGRASGPLAGIRIVEFAGIGPGPFGAMLLADMGAEVITLTRAGQTPRGAAARGRKIVVVDLKDKASL
DGVLALLDNADALIEGYRPGVMERLGLGPDVVLGRNPKLVYGRMTGWGQTGPLAQAAGHDINYISITGALAAIGPAEKPV
PPLNLVGDFGGGSMYLVVGMLAALLEAKSSGKGQVVDAAMCDGAASLITMFFDMTSAGRWQEGRESNMLDGGAHFYGVYE
CKDGHFVSIGSIEPQFYKLLRELAGLTDPQYDGQMDPKNWPALKEKLTAVFKTRTRDEWCQLMEGTDVCFAPVLTMAEAT
QHPHMVAREVFITHEGHTQPAPAPRFSRTPSSVRTPLQADLVGLAKEWGGK

Sequences:

>Translated_371_residues
MQDTATASKKPQTSGRASGPLAGIRIVEFAGIGPGPFGAMLLADMGAEVITLTRAGQTPRGAAARGRKIVVVDLKDKASL
DGVLALLDNADALIEGYRPGVMERLGLGPDVVLGRNPKLVYGRMTGWGQTGPLAQAAGHDINYISITGALAAIGPAEKPV
PPLNLVGDFGGGSMYLVVGMLAALLEAKSSGKGQVVDAAMCDGAASLITMFFDMTSAGRWQEGRESNMLDGGAHFYGVYE
CKDGHFVSIGSIEPQFYKLLRELAGLTDPQYDGQMDPKNWPALKEKLTAVFKTRTRDEWCQLMEGTDVCFAPVLTMAEAT
QHPHMVAREVFITHEGHTQPAPAPRFSRTPSSVRTPLQADLVGLAKEWGGK
>Mature_371_residues
MQDTATASKKPQTSGRASGPLAGIRIVEFAGIGPGPFGAMLLADMGAEVITLTRAGQTPRGAAARGRKIVVVDLKDKASL
DGVLALLDNADALIEGYRPGVMERLGLGPDVVLGRNPKLVYGRMTGWGQTGPLAQAAGHDINYISITGALAAIGPAEKPV
PPLNLVGDFGGGSMYLVVGMLAALLEAKSSGKGQVVDAAMCDGAASLITMFFDMTSAGRWQEGRESNMLDGGAHFYGVYE
CKDGHFVSIGSIEPQFYKLLRELAGLTDPQYDGQMDPKNWPALKEKLTAVFKTRTRDEWCQLMEGTDVCFAPVLTMAEAT
QHPHMVAREVFITHEGHTQPAPAPRFSRTPSSVRTPLQADLVGLAKEWGGK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=334, Percent_Identity=43.1137724550898, Blast_Score=293, Evalue=2e-79,
Organism=Homo sapiens, GI266456254, Length=334, Percent_Identity=43.1137724550898, Blast_Score=293, Evalue=2e-79,
Organism=Homo sapiens, GI266458393, Length=279, Percent_Identity=41.5770609318996, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI266458397, Length=242, Percent_Identity=44.2148760330579, Blast_Score=218, Evalue=9e-57,
Organism=Homo sapiens, GI300863128, Length=373, Percent_Identity=26.0053619302949, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI300863124, Length=335, Percent_Identity=26.2686567164179, Blast_Score=121, Evalue=9e-28,
Organism=Homo sapiens, GI266458395, Length=134, Percent_Identity=42.5373134328358, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI42822893, Length=134, Percent_Identity=42.5373134328358, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI300863126, Length=372, Percent_Identity=23.9247311827957, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI13376042, Length=335, Percent_Identity=23.5820895522388, Blast_Score=92, Evalue=9e-19,
Organism=Escherichia coli, GI87082093, Length=352, Percent_Identity=29.5454545454545, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1786222, Length=365, Percent_Identity=28.4931506849315, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788717, Length=208, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32564160, Length=331, Percent_Identity=32.02416918429, Blast_Score=197, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI115535051, Length=342, Percent_Identity=32.4561403508772, Blast_Score=194, Evalue=8e-50,
Organism=Drosophila melanogaster, GI24585488, Length=335, Percent_Identity=41.4925373134328, Blast_Score=279, Evalue=2e-75,
Organism=Drosophila melanogaster, GI24648431, Length=337, Percent_Identity=29.673590504451, Blast_Score=112, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39380; Mature: 39380

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDTATASKKPQTSGRASGPLAGIRIVEFAGIGPGPFGAMLLADMGAEVITLTRAGQTPR
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCC
GAAARGRKIVVVDLKDKASLDGVLALLDNADALIEGYRPGVMERLGLGPDVVLGRNPKLV
CHHHCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHCCCCCEEECCCCCEE
YGRMTGWGQTGPLAQAAGHDINYISITGALAAIGPAEKPVPPLNLVGDFGGGSMYLVVGM
EEECCCCCCCCCCHHHCCCCCEEEEECCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHH
LAALLEAKSSGKGQVVDAAMCDGAASLITMFFDMTSAGRWQEGRESNMLDGGAHFYGVYE
HHHHHHHCCCCCCCEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
CKDGHFVSIGSIEPQFYKLLRELAGLTDPQYDGQMDPKNWPALKEKLTAVFKTRTRDEWC
ECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
QLMEGTDVCFAPVLTMAEATQHPHMVAREVFITHEGHTQPAPAPRFSRTPSSVRTPLQAD
HHHCCCCHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCCCCCCCCCCCHHHCCCHHHH
LVGLAKEWGGK
HHHHHHHHCCC
>Mature Secondary Structure
MQDTATASKKPQTSGRASGPLAGIRIVEFAGIGPGPFGAMLLADMGAEVITLTRAGQTPR
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCCCCC
GAAARGRKIVVVDLKDKASLDGVLALLDNADALIEGYRPGVMERLGLGPDVVLGRNPKLV
CHHHCCCEEEEEECCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHCCCCCEEECCCCCEE
YGRMTGWGQTGPLAQAAGHDINYISITGALAAIGPAEKPVPPLNLVGDFGGGSMYLVVGM
EEECCCCCCCCCCHHHCCCCCEEEEECCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHH
LAALLEAKSSGKGQVVDAAMCDGAASLITMFFDMTSAGRWQEGRESNMLDGGAHFYGVYE
HHHHHHHCCCCCCCEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
CKDGHFVSIGSIEPQFYKLLRELAGLTDPQYDGQMDPKNWPALKEKLTAVFKTRTRDEWC
ECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
QLMEGTDVCFAPVLTMAEATQHPHMVAREVFITHEGHTQPAPAPRFSRTPSSVRTPLQAD
HHHCCCCHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCCCCCCCCCCCHHHCCCHHHH
LVGLAKEWGGK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]