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The map label for this gene is 86748011

Identifier: 86748011

GI number: 86748011

Start: 1012925

End: 1013524

Strand: Direct

Name: 86748011

Synonym: RPB_0885

Alternate gene names: NA

Gene position: 1012925-1013524 (Clockwise)

Preceding gene: 86748010

Following gene: 86748013

Centisome position: 19.0

GC content: 63.5

Gene sequence:

>600_bases
ATGGCCGCACCAGCCTCTTCCACCCGTCCGCTCGTCATCATCGCGGCGTTCGCCGGCAGTCTGGTCGTTGGCCTGGTGGT
GGTGCTGTGGCTGCTCGGCGGGTTGAACAAGGTCGCGGCCCCGGCGTCGATCGGCGGCCCATTCCAGCTCACCGACCACA
ACGGCCGGATCGTCACCGAGCAGAGCCTGAAGGGTAAACCGACGCTGATCTTCTTCGGCTTCACCCGCTGCCCCGATGTC
TGCCCGACCTCGTTGTTCGAGATCACCCAGGTGCTGCAGGCGCTGGGTCCCGACGCCGACCGCCTCAACGCCTATTTCGT
CTCGGTCGATCCGGAGCGCGACACGCCGGAGTCGATGAAGGAGTATCTGTCGAGCTTCGATCCGCATCTCAAGGGACTGA
TCGGCTCGCGCGAGGCCACCGACAAGATCGAGAAGGGCTACCGGGTCTACGCCAAGAAGGTCCCGACCTCGGATGGCGAC
TACACGATGGATCATACTGCGCTGATCTATCTGATGGACAAGGACGGCAGGTTCGTCGCCCCGTTCAACATGAAGCGGAA
GCCCGAAGAGGCCGCCGCGGATCTGAAGCGCTATCTCTGA

Upstream 100 bases:

>100_bases
CTGCGCTCTATGGCTTCGGCACATGCGGCGCCGCGCCGTGTGGATCTTGCCGGTGCGCGGACGCTCGCTTCGCCGACCGG
CTCTCGACGAGGATTCCGCG

Downstream 100 bases:

>100_bases
CGAGCGTTTTCCCGACGGCCTTCGGCGAAGGGGCGGCACGCGCGGCGACGCCGTGCTCGGTCTTCTGCCAATGATGCGGC
TTCCACACCAGTTCGCCGAG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAAPASSTRPLVIIAAFAGSLVVGLVVVLWLLGGLNKVAAPASIGGPFQLTDHNGRIVTEQSLKGKPTLIFFGFTRCPDV
CPTSLFEITQVLQALGPDADRLNAYFVSVDPERDTPESMKEYLSSFDPHLKGLIGSREATDKIEKGYRVYAKKVPTSDGD
YTMDHTALIYLMDKDGRFVAPFNMKRKPEEAAADLKRYL

Sequences:

>Translated_199_residues
MAAPASSTRPLVIIAAFAGSLVVGLVVVLWLLGGLNKVAAPASIGGPFQLTDHNGRIVTEQSLKGKPTLIFFGFTRCPDV
CPTSLFEITQVLQALGPDADRLNAYFVSVDPERDTPESMKEYLSSFDPHLKGLIGSREATDKIEKGYRVYAKKVPTSDGD
YTMDHTALIYLMDKDGRFVAPFNMKRKPEEAAADLKRYL
>Mature_198_residues
AAPASSTRPLVIIAAFAGSLVVGLVVVLWLLGGLNKVAAPASIGGPFQLTDHNGRIVTEQSLKGKPTLIFFGFTRCPDVC
PTSLFEITQVLQALGPDADRLNAYFVSVDPERDTPESMKEYLSSFDPHLKGLIGSREATDKIEKGYRVYAKKVPTSDGDY
TMDHTALIYLMDKDGRFVAPFNMKRKPEEAAADLKRYL

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=218, Percent_Identity=36.697247706422, Blast_Score=134, Evalue=5e-32,
Organism=Homo sapiens, GI281182727, Length=162, Percent_Identity=37.6543209876543, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI281182722, Length=162, Percent_Identity=37.6543209876543, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI281182716, Length=162, Percent_Identity=37.6543209876543, Blast_Score=121, Evalue=5e-28,
Organism=Homo sapiens, GI153791313, Length=162, Percent_Identity=37.6543209876543, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17531419, Length=161, Percent_Identity=37.888198757764, Blast_Score=126, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6319498, Length=147, Percent_Identity=40.1360544217687, Blast_Score=125, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=147, Percent_Identity=40.8163265306122, Blast_Score=115, Evalue=6e-27,
Organism=Drosophila melanogaster, GI19920710, Length=211, Percent_Identity=34.1232227488152, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21768; Mature: 21637

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPASSTRPLVIIAAFAGSLVVGLVVVLWLLGGLNKVAAPASIGGPFQLTDHNGRIVTE
CCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCEEEEC
QSLKGKPTLIFFGFTRCPDVCPTSLFEITQVLQALGPDADRLNAYFVSVDPERDTPESMK
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCEEEEEEECCCCCCHHHHH
EYLSSFDPHLKGLIGSREATDKIEKGYRVYAKKVPTSDGDYTMDHTALIYLMDKDGRFVA
HHHHHCCHHHHHHHCCCHHHHHHHHCCEEEEEECCCCCCCEEECCEEEEEEECCCCCEEC
PFNMKRKPEEAAADLKRYL
CCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AAPASSTRPLVIIAAFAGSLVVGLVVVLWLLGGLNKVAAPASIGGPFQLTDHNGRIVTE
CCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCEEEEC
QSLKGKPTLIFFGFTRCPDVCPTSLFEITQVLQALGPDADRLNAYFVSVDPERDTPESMK
CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCEEEEEEECCCCCCHHHHH
EYLSSFDPHLKGLIGSREATDKIEKGYRVYAKKVPTSDGDYTMDHTALIYLMDKDGRFVA
HHHHHCCHHHHHHHCCCHHHHHHHHCCEEEEEECCCCCCCEEECCEEEEEEECCCCCEEC
PFNMKRKPEEAAADLKRYL
CCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA