Click here to switch to the map view.

The map label for this gene is 86748006

Identifier: 86748006

GI number: 86748006

Start: 1007333

End: 1008319

Strand: Reverse

Name: 86748006

Synonym: RPB_0880

Alternate gene names: NA

Gene position: 1008319-1007333 (Counterclockwise)

Preceding gene: 86748008

Following gene: 86748005

Centisome position: 18.91

GC content: 67.27

Gene sequence:

>987_bases
ATGACCCTGATCAGCCGACAAAGCACCTTCCGCCTCGCCGCGCTCGCACTTTTGACCACGCTGCTGCCGCTCCACGGCGC
CGCGGCCGAAGGACTGTATCCCGCGCGCCCCGTCCGCATCGTGGTGCCGTTCGCCGCCGGCGGCGTCGCCGACATCACCG
CCCGGCTGGTCGCCGACAAGCTCGGCGCCAAGCTCGGCAGCCGCTTCTACATCGAGAACCAGCCCGGCGCCGGCGGCATC
AGTGCGGCGCGCACCGTGATCGCGGCGCAGCCCGACGGCTACACGCTGGCGCTGCTGTCGAACGGCACCGCGATCAGCGC
CTCGCTGTTCAAGAAGCTGCCGTTCGATCCGGTCAAGGACTTCGCGCCGATCTCGACTCTCGGCTTCTTCGACTTCCTGT
TCACGGTCCGGGCCGATGCGCCCTACAAGACGATGGAAGAGTTCATCAAGGCGGGCAAGCAGAGCCCGGGCCGATTCAAT
GTCGGCACCATCATTCTCGGCAGCACGCAGAATCTCGCGGCCGGCATGTTCAAGACCGCGGCGGGGATCGACTTCGTCAC
GATTCCGCATCGTGGCACGCCGGACGTCTTGGTGTCGCTGCTGCAGGGCAATCTCGACATGGCGATCGACAGCTACTCGG
CGCTGAAGGGCAGCCTCGCCGACGGCAAGATCCGCACGCTGGCCGCCTCGGGGCCGCTGCGCTCCAAGATCACGCCGAAC
GTGCCGACGCTGCGCGAAAACGGACTGGAAGTGAGCATCGAATCCTGGAACGCGCTGTTCGCGCCGGCCGCGACGCCGCC
GGCGGTGATCAGCACGCTGAACCGCGCGCTGCAGGAGATCCTCGCCGAACCGGCGCTGAAGAAACAGCTGCTCGACCTCG
GCGTCGACGCGCGCGGCTCGACGCCGGACCAGCTCGCGACGCGACTGCGCGCCGACATCGAGAAATGGAAGGCCGTGATC
GAGACCTCCGGGATCGAGAAACAATAG

Upstream 100 bases:

>100_bases
CCGACGTCACCCGCCCGGCGGAATTCGGCGGACCTGCGCAACCTGGGTCAATTGCTTGCTGTGATTGTGAATTCGAGCCC
TTTTGGACTATCGTCGAAGG

Downstream 100 bases:

>100_bases
CGGCCCGTCCGGGCAAGGCATTCGATGAATCTCAAGCAGCTCGAATATTTCATGCGCGTGGCCGAGCTCGGCTCGTTCAG
CAAGGCGGCGATGATGCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MTLISRQSTFRLAALALLTTLLPLHGAAAEGLYPARPVRIVVPFAAGGVADITARLVADKLGAKLGSRFYIENQPGAGGI
SAARTVIAAQPDGYTLALLSNGTAISASLFKKLPFDPVKDFAPISTLGFFDFLFTVRADAPYKTMEEFIKAGKQSPGRFN
VGTIILGSTQNLAAGMFKTAAGIDFVTIPHRGTPDVLVSLLQGNLDMAIDSYSALKGSLADGKIRTLAASGPLRSKITPN
VPTLRENGLEVSIESWNALFAPAATPPAVISTLNRALQEILAEPALKKQLLDLGVDARGSTPDQLATRLRADIEKWKAVI
ETSGIEKQ

Sequences:

>Translated_328_residues
MTLISRQSTFRLAALALLTTLLPLHGAAAEGLYPARPVRIVVPFAAGGVADITARLVADKLGAKLGSRFYIENQPGAGGI
SAARTVIAAQPDGYTLALLSNGTAISASLFKKLPFDPVKDFAPISTLGFFDFLFTVRADAPYKTMEEFIKAGKQSPGRFN
VGTIILGSTQNLAAGMFKTAAGIDFVTIPHRGTPDVLVSLLQGNLDMAIDSYSALKGSLADGKIRTLAASGPLRSKITPN
VPTLRENGLEVSIESWNALFAPAATPPAVISTLNRALQEILAEPALKKQLLDLGVDARGSTPDQLATRLRADIEKWKAVI
ETSGIEKQ
>Mature_327_residues
TLISRQSTFRLAALALLTTLLPLHGAAAEGLYPARPVRIVVPFAAGGVADITARLVADKLGAKLGSRFYIENQPGAGGIS
AARTVIAAQPDGYTLALLSNGTAISASLFKKLPFDPVKDFAPISTLGFFDFLFTVRADAPYKTMEEFIKAGKQSPGRFNV
GTIILGSTQNLAAGMFKTAAGIDFVTIPHRGTPDVLVSLLQGNLDMAIDSYSALKGSLADGKIRTLAASGPLRSKITPNV
PTLRENGLEVSIESWNALFAPAATPPAVISTLNRALQEILAEPALKKQLLDLGVDARGSTPDQLATRLRADIEKWKAVIE
TSGIEKQ

Specific function: Unknown

COG id: COG3181

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0065 (bug) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005064 [H]

Pfam domain/function: PF03401 Bug [H]

EC number: NA

Molecular weight: Translated: 34665; Mature: 34534

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLISRQSTFRLAALALLTTLLPLHGAAAEGLYPARPVRIVVPFAAGGVADITARLVADK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
LGAKLGSRFYIENQPGAGGISAARTVIAAQPDGYTLALLSNGTAISASLFKKLPFDPVKD
HHHHHCCEEEEECCCCCCCHHHHHEEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCHHH
FAPISTLGFFDFLFTVRADAPYKTMEEFIKAGKQSPGRFNVGTIILGSTQNLAAGMFKTA
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECEEEEEECCCHHHHHHHHHH
AGIDFVTIPHRGTPDVLVSLLQGNLDMAIDSYSALKGSLADGKIRTLAASGPLRSKITPN
CCCEEEEECCCCCHHHHHHHHHCCHHHEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC
VPTLRENGLEVSIESWNALFAPAATPPAVISTLNRALQEILAEPALKKQLLDLGVDARGS
CCCHHCCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
TPDQLATRLRADIEKWKAVIETSGIEKQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLISRQSTFRLAALALLTTLLPLHGAAAEGLYPARPVRIVVPFAAGGVADITARLVADK
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
LGAKLGSRFYIENQPGAGGISAARTVIAAQPDGYTLALLSNGTAISASLFKKLPFDPVKD
HHHHHCCEEEEECCCCCCCHHHHHEEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCHHH
FAPISTLGFFDFLFTVRADAPYKTMEEFIKAGKQSPGRFNVGTIILGSTQNLAAGMFKTA
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECEEEEEECCCHHHHHHHHHH
AGIDFVTIPHRGTPDVLVSLLQGNLDMAIDSYSALKGSLADGKIRTLAASGPLRSKITPN
CCCEEEEECCCCCHHHHHHHHHCCHHHEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC
VPTLRENGLEVSIESWNALFAPAATPPAVISTLNRALQEILAEPALKKQLLDLGVDARGS
CCCHHCCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
TPDQLATRLRADIEKWKAVIETSGIEKQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3299368 [H]