| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86747986
Identifier: 86747986
GI number: 86747986
Start: 984404
End: 985372
Strand: Reverse
Name: 86747986
Synonym: RPB_0860
Alternate gene names: NA
Gene position: 985372-984404 (Counterclockwise)
Preceding gene: 86747989
Following gene: 86747981
Centisome position: 18.48
GC content: 71.83
Gene sequence:
>969_bases ATGGTAGGGGTCGCAGGGGCGGATTTCCAGCAGGACCTTCTGTTCGCGTTCGGTGGCGGAGATCCGCAGATCACCATCGC GGTGCTGGATGGGCCGGTGGATCGCACACATGATTGTTTTCGCGGCGCGCGGCTGGCTCCGCTCGACACGCCGGCTGCGG CGCGATGCGCCGAGGAATTCGCCAGCGCGCAGGGCACGCATCTGGCGAGTCTGATTTTCGGCCAGCCCTGCAGTTCGGTC GAAGGCGTCGCGCCGCTCTGCCGCGGGCTGATCGCACCGATCTTCGGCGACGACCGGCCGGGCTGCTCCCAGACCGATCT GGCGCAGGCGATCGTGATGGCGCTGGATCACGGCGCCCACATCCTCCACATCAGCGGCGGATTGTTCGACGGGCGGCGGC AGCCGACCGCCGAACTGAGCGCGGCCGTGGCGCTGTGCAACGACCACAACGCGCTGATCGTCGCCGGCGCCGGCCGCGAT GGCTGCGCCAGCCTGCTGCGCCGCTGCGGCGCGGTGAATCTTCTCCCGGTGGGCGCGATCGACAGAAACGGCCGGCTGAT CGGCGGCAGCGACGCCAGCCTGCACGAGATCGGCATCGCGGTCCCCGGCGCCAGGCTGATCGGCGCGACGCTGGAAGGCG GCATCGGCGAGCGCCGCGGCGCGAACTACTCGGCCGCTTTGATCGCCGGCATTGCCGGGCTGCTGCTCGGGACGCAGACC GCCACCGGCCGGGCCCACGACCCCGGCGCGGCCATCGAGGCGATCCTCGGCAGCGCGACGCCGCGGCTCGCGGCGCGGGC CGACGAATGCCAGCGCGCCTGGATCGGCCGGGCAAATGTCGAAGCCGCCGCGGCCCGCCTCACCGGCGTGATGTTCGACA GTGCCGCGACGTCTCCGTTCGGACTGTGGCATCGGGCGCTGACGAATGCGCAGCCGTCGGACCACGCCACGTTCCGGCCG CGGGCGTGA
Upstream 100 bases:
>100_bases CTCGGAGTTGGCCGCTGGAGCTGCAGGGCGGGTCGTGCGCGGACTTTATGCGAGCAAGTCGCATGTCGCGGAACGGCGGA GTTAGTAAGGGCGGGGTGAA
Downstream 100 bases:
>100_bases CCGCGCCGGGCTTTGCGCGCGGACCAGCGTGACTTCGCAGCTTCGCATGGTCGGATCGTCGGGGCGGACCGCAATGGTTA CGATGCAGAGTCGCGCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase PatA-Like Protein; Subtilase Family Protease; Peptidase S8/S53 Subtilisin Kexin Sedolisin
Number of amino acids: Translated: 322; Mature: 322
Protein sequence:
>322_residues MVGVAGADFQQDLLFAFGGGDPQITIAVLDGPVDRTHDCFRGARLAPLDTPAAARCAEEFASAQGTHLASLIFGQPCSSV EGVAPLCRGLIAPIFGDDRPGCSQTDLAQAIVMALDHGAHILHISGGLFDGRRQPTAELSAAVALCNDHNALIVAGAGRD GCASLLRRCGAVNLLPVGAIDRNGRLIGGSDASLHEIGIAVPGARLIGATLEGGIGERRGANYSAALIAGIAGLLLGTQT ATGRAHDPGAAIEAILGSATPRLAARADECQRAWIGRANVEAAAARLTGVMFDSAATSPFGLWHRALTNAQPSDHATFRP RA
Sequences:
>Translated_322_residues MVGVAGADFQQDLLFAFGGGDPQITIAVLDGPVDRTHDCFRGARLAPLDTPAAARCAEEFASAQGTHLASLIFGQPCSSV EGVAPLCRGLIAPIFGDDRPGCSQTDLAQAIVMALDHGAHILHISGGLFDGRRQPTAELSAAVALCNDHNALIVAGAGRD GCASLLRRCGAVNLLPVGAIDRNGRLIGGSDASLHEIGIAVPGARLIGATLEGGIGERRGANYSAALIAGIAGLLLGTQT ATGRAHDPGAAIEAILGSATPRLAARADECQRAWIGRANVEAAAARLTGVMFDSAATSPFGLWHRALTNAQPSDHATFRP RA >Mature_322_residues MVGVAGADFQQDLLFAFGGGDPQITIAVLDGPVDRTHDCFRGARLAPLDTPAAARCAEEFASAQGTHLASLIFGQPCSSV EGVAPLCRGLIAPIFGDDRPGCSQTDLAQAIVMALDHGAHILHISGGLFDGRRQPTAELSAAVALCNDHNALIVAGAGRD GCASLLRRCGAVNLLPVGAIDRNGRLIGGSDASLHEIGIAVPGARLIGATLEGGIGERRGANYSAALIAGIAGLLLGTQT ATGRAHDPGAAIEAILGSATPRLAARADECQRAWIGRANVEAAAARLTGVMFDSAATSPFGLWHRALTNAQPSDHATFRP RA
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32867; Mature: 32867
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGVAGADFQQDLLFAFGGGDPQITIAVLDGPVDRTHDCFRGARLAPLDTPAAARCAEEF CCCCCCCCHHHCEEEEECCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHH ASAQGTHLASLIFGQPCSSVEGVAPLCRGLIAPIFGDDRPGCSQTDLAQAIVMALDHGAH HHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCE ILHISGGLFDGRRQPTAELSAAVALCNDHNALIVAGAGRDGCASLLRRCGAVNLLPVGAI EEEEECCCCCCCCCCHHHHHHHHHEECCCCEEEEEECCCHHHHHHHHHCCCCCEEEECEE DRNGRLIGGSDASLHEIGIAVPGARLIGATLEGGIGERRGANYSAALIAGIAGLLLGTQT CCCCEEECCCCCCHHHEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC ATGRAHDPGAAIEAILGSATPRLAARADECQRAWIGRANVEAAAARLTGVMFDSAATSPF CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHH GLWHRALTNAQPSDHATFRPRA HHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MVGVAGADFQQDLLFAFGGGDPQITIAVLDGPVDRTHDCFRGARLAPLDTPAAARCAEEF CCCCCCCCHHHCEEEEECCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCHHHHHHHHH ASAQGTHLASLIFGQPCSSVEGVAPLCRGLIAPIFGDDRPGCSQTDLAQAIVMALDHGAH HHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCE ILHISGGLFDGRRQPTAELSAAVALCNDHNALIVAGAGRDGCASLLRRCGAVNLLPVGAI EEEEECCCCCCCCCCHHHHHHHHHEECCCCEEEEEECCCHHHHHHHHHCCCCCEEEECEE DRNGRLIGGSDASLHEIGIAVPGARLIGATLEGGIGERRGANYSAALIAGIAGLLLGTQT CCCCEEECCCCCCHHHEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC ATGRAHDPGAAIEAILGSATPRLAARADECQRAWIGRANVEAAAARLTGVMFDSAATSPF CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHH GLWHRALTNAQPSDHATFRPRA HHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA